4930412C18Rik (RIKEN cDNA 4930412C18 gene) - Rat Genome Database

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Gene: 4930412C18Rik (RIKEN cDNA 4930412C18 gene) Mus musculus
Analyze
Symbol: 4930412C18Rik
Name: RIKEN cDNA 4930412C18 gene
RGD ID: 1611980
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 5730591J02Rik
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3949,770,585 - 9,823,411 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl49,769,995 - 9,830,021 (+)EnsemblGRCm39 Ensembl
GRCm3849,770,585 - 9,823,411 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl49,770,585 - 9,823,411 (+)EnsemblGRCm38mm10GRCm38
MGSCv3749,697,732 - 9,750,558 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera49,587,904 - 9,639,661 (+)NCBICelera
Cytogenetic Map4A1NCBI
cM Map44.32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068  


Genomics

Variants

.
Variants in 4930412C18Rik
1772 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:352
Count of miRNA genes:300
Interacting mature miRNAs:322
Transcripts:ENSMUST00000124122, ENSMUST00000138390, ENSMUST00000144703, ENSMUST00000146481, ENSMUST00000154082
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412079Sm1_msusceptibility to Schistosoma mansoni infection 1 (mouse)Not determined4122955614Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1301473Triglq1_mtriglyceride QTL 1 (mouse)Not determined4868324042683429Mouse
11049579Lmr9b_mleishmaniasis resistance 9b (mouse)4120657234Mouse
11049580Lmr9a_mleishmaniasis resistance 9 (mouse)4120657234Mouse
1301510Bbaa13_mB.burgdorferi-associated arthritis 13 (mouse)Not determined4126395649Mouse
1558992Ses8_msalmonella enteritidis susceptibility 8 (mouse)Not determined4868324042683429Mouse
1302010Wta1_mweight adult 1 (mouse)Not determined4868324042683429Mouse
4141302Ssrq5_mstress response QTL 5 (mouse)Not determined868324042683430Mouse
1301274Lmr9_mleishmaniasis resistance 9 (mouse)Not determined4120657234Mouse
1302125Lxw1_mlupus BXSB x NZW 1 (mouse)Not determined4868324042683429Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000124122
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,585 - 9,821,951 (+)Ensembl
GRCm38.p6 Ensembl49,770,585 - 9,821,951 (+)Ensembl
Ensembl Acc Id: ENSMUST00000138390
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,585 - 9,823,411 (+)Ensembl
GRCm38.p6 Ensembl49,770,585 - 9,823,411 (+)Ensembl
Ensembl Acc Id: ENSMUST00000144703
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,679 - 9,780,707 (+)Ensembl
GRCm38.p6 Ensembl49,770,679 - 9,780,707 (+)Ensembl
Ensembl Acc Id: ENSMUST00000146481
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,629 - 9,777,011 (+)Ensembl
GRCm38.p6 Ensembl49,770,651 - 9,776,944 (+)Ensembl
Ensembl Acc Id: ENSMUST00000154082
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,678 - 9,820,761 (+)Ensembl
GRCm38.p6 Ensembl49,770,797 - 9,820,286 (+)Ensembl
Ensembl Acc Id: ENSMUST00000241676
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,603 - 9,783,311 (+)Ensembl
Ensembl Acc Id: ENSMUST00000241961
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,569 - 9,820,982 (+)Ensembl
Ensembl Acc Id: ENSMUST00000242088
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,661 - 9,823,414 (+)Ensembl
Ensembl Acc Id: ENSMUST00000243181
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,637 - 9,780,710 (+)Ensembl
Ensembl Acc Id: ENSMUST00000243912
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,660 - 9,798,697 (+)Ensembl
Ensembl Acc Id: ENSMUST00000244788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,661 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000244929
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,661 - 9,783,311 (+)Ensembl
Ensembl Acc Id: ENSMUST00000245002
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,611 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000245486
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,675 - 9,820,751 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279133
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,660 - 9,830,021 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279134
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,641 - 9,823,412 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279135
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,660 - 9,823,411 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279136
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,678 - 9,823,412 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279137
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,678 - 9,823,412 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279138
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,705 - 9,823,414 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279139
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,106 - 9,820,478 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279140
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,594 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279141
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,624 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279142
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,633 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279143
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,633 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279144
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,637 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,639 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279146
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,639 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279147
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,640 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279148
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,641 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279149
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,661 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,661 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,662 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279152
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,671 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279153
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,710 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279154
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,858 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279155
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,771,024 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279156
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,609 - 9,798,703 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,637 - 9,798,693 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279158
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,641 - 9,798,675 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279159
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,726 - 9,798,693 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279160
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,645 - 9,798,470 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279161
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,805,369 - 9,820,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279162
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,078 - 9,783,311 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279163
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,645 - 9,783,292 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279164
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,678 - 9,783,283 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279165
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,741 - 9,783,292 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279166
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,678 - 9,783,130 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,769 - 9,782,970 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,611 - 9,781,330 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279169
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,651 - 9,781,335 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279170
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,769,995 - 9,776,917 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279171
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,078 - 9,776,917 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279172
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,569 - 9,776,991 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279173
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,606 - 9,776,996 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279174
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,622 - 9,776,996 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,639 - 9,776,954 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279176
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,654 - 9,776,954 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279177
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,661 - 9,776,954 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279178
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,661 - 9,776,953 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279179
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,629 - 9,776,917 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279180
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,678 - 9,776,932 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279181
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,672 - 9,776,917 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279182
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,775,065 - 9,776,917 (+)Ensembl
Ensembl Acc Id: ENSMUST00000279183
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl49,770,626 - 9,771,241 (+)Ensembl
RefSeq Acc Id: NR_030693
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,770,585 - 9,823,411 (+)NCBI
GRCm3849,770,585 - 9,823,411 (+)ENTREZGENE
MGSCv3749,697,732 - 9,750,558 (+)RGD
Celera49,587,904 - 9,639,661 (+)RGD
cM Map4 ENTREZGENE
Sequence:
Promoters
RGD ID:6882790
Promoter ID:EPDNEW_M4846
Type:multiple initiation site
Name:4930412C18Rik_1
Description:Mus musculus RIKEN cDNA 4930412C18 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3849,770,678 - 9,770,738EPDNEW
RGD ID:15092655
Promoter ID:EPDNEWNC_M576
Type:single initiation site
Name:4930412C18Rik_1
Description:RIKEN cDNA 4930412C18 gene [Source:MGISymbol;Acc:MGI:2443490]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3849,770,762 - 9,770,822EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000085558 Ensembl
MGD MGI:2443490 ENTREZGENE
NCBI Gene 320152 ENTREZGENE
PhenoGen 4930412C18Rik PhenoGen
RNAcentral URS000075A5B9 RNACentral