A930037H05Rik (RIKEN cDNA A930037H05 gene) - Rat Genome Database

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Gene: A930037H05Rik (RIKEN cDNA A930037H05 gene) Mus musculus
Analyze
Symbol: A930037H05Rik
Name: RIKEN cDNA A930037H05 gene
RGD ID: 1611702
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: Gm44935; hypothetical protein LOC78439; uncharacterized protein LOC78439
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911119,352,026 - 119,382,061 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11119,339,614 - 119,382,439 (-)EnsemblGRCm39 Ensembl
GRCm3811119,461,200 - 119,491,235 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11119,448,788 - 119,491,298 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11E2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in A930037H05Rik
1276 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000207133
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,339,614 - 119,382,124 (-)Ensembl
GRCm38.p6 Ensembl11119,448,788 - 119,491,298 (-)Ensembl
Ensembl Acc Id: ENSMUST00000207273
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,368,326 - 119,382,081 (-)Ensembl
GRCm38.p6 Ensembl11119,477,798 - 119,491,235 (-)Ensembl
Ensembl Acc Id: ENSMUST00000207446
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,352,029 - 119,382,061 (-)Ensembl
GRCm38.p6 Ensembl11119,461,203 - 119,491,235 (-)Ensembl
Ensembl Acc Id: ENSMUST00000208034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,379,492 - 119,382,061 (-)Ensembl
GRCm38.p6 Ensembl11119,488,666 - 119,491,235 (-)Ensembl
Ensembl Acc Id: ENSMUST00000208152
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,366,878 - 119,371,258 (-)Ensembl
GRCm38.p6 Ensembl11119,476,052 - 119,480,432 (-)Ensembl
Ensembl Acc Id: ENSMUST00000208476
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,352,027 - 119,382,015 (-)Ensembl
GRCm38.p6 Ensembl11119,461,201 - 119,491,189 (-)Ensembl
Ensembl Acc Id: ENSMUST00000256315
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,351,515 - 119,382,200 (-)Ensembl
Ensembl Acc Id: ENSMUST00000256316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,351,588 - 119,382,178 (-)Ensembl
Ensembl Acc Id: ENSMUST00000256317
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,351,585 - 119,382,081 (-)Ensembl
Ensembl Acc Id: ENSMUST00000256318
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,353,883 - 119,382,061 (-)Ensembl
Ensembl Acc Id: ENSMUST00000256319
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,366,861 - 119,382,439 (-)Ensembl
Ensembl Acc Id: ENSMUST00000256320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,368,766 - 119,382,066 (-)Ensembl
Ensembl Acc Id: ENSMUST00000256321
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,370,485 - 119,382,064 (-)Ensembl
Ensembl Acc Id: ENSMUST00000256322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,378,063 - 119,382,191 (-)Ensembl
Ensembl Acc Id: ENSMUST00000256323
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,378,204 - 119,382,172 (-)Ensembl
Ensembl Acc Id: ENSMUST00000256324
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,381,058 - 119,382,061 (-)Ensembl
RefSeq Acc Id: NR_153849
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911119,352,026 - 119,382,061 (-)NCBI
GRCm3811119,461,200 - 119,491,235 (-)NCBI
Sequence:
Promoters
RGD ID:15094050
Promoter ID:EPDNEWNC_M1946
Type:single initiation site
Name:A930037H05Rik_1
Description:RIKEN cDNA A930037H05 gene [Source:MGISymbol;Acc:MGI:1925689]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811119,491,235 - 119,491,295EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000109408 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000208476 ENTREZGENE
MGD MGI:1925689 ENTREZGENE
NCBI Gene 78439 ENTREZGENE
PhenoGen A930037H05Rik PhenoGen
RNAcentral URS0000CCE0B5 RNACentral