1700022N22Rik (RIKEN cDNA 1700022N22 gene) - Rat Genome Database

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Gene: 1700022N22Rik (RIKEN cDNA 1700022N22 gene) Mus musculus
Analyze
Symbol: 1700022N22Rik
Name: RIKEN cDNA 1700022N22 gene
RGD ID: 1611423
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC69431
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,204,804 - 26,210,004 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,204,470 - 26,218,453 (+)EnsemblGRCm39 Ensembl
GRCm381725,985,830 - 25,991,030 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,985,808 - 25,991,030 (+)EnsemblGRCm38mm10GRCm38
MGSCv371726,122,760 - 26,125,517 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361726,122,760 - 26,125,519 (+)NCBIMGSCv36mm8
Celera1726,518,960 - 26,521,717 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.05NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:24200680   PMID:27899360  


Genomics

Variants

.
Variants in 1700022N22Rik
200 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:108
Interacting mature miRNAs:110
Transcripts:ENSMUST00000180932
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171263668226401133Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
12903990Opfaq5_mopen field activity QTL 5 (mouse)172595092528992098Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000180932
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,204,470 - 26,208,378 (+)Ensembl
GRCm38.p6 Ensembl1725,985,808 - 25,988,574 (+)Ensembl
Ensembl Acc Id: ENSMUST00000235322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,204,856 - 26,210,004 (+)Ensembl
GRCm38.p6 Ensembl1725,985,882 - 25,991,030 (+)Ensembl
Ensembl Acc Id: ENSMUST00000235528
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,204,477 - 26,208,367 (+)Ensembl
GRCm38.p6 Ensembl1725,986,066 - 25,988,404 (+)Ensembl
Ensembl Acc Id: ENSMUST00000241935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,204,762 - 26,207,558 (+)Ensembl
Ensembl Acc Id: ENSMUST00000268663
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,204,857 - 26,218,453 (+)Ensembl
Ensembl Acc Id: ENSMUST00000268664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,204,873 - 26,218,453 (+)Ensembl
Ensembl Acc Id: ENSMUST00000268665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,204,760 - 26,212,866 (+)Ensembl
Ensembl Acc Id: ENSMUST00000268666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,204,789 - 26,212,866 (+)Ensembl
Ensembl Acc Id: ENSMUST00000268667
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,204,797 - 26,212,866 (+)Ensembl
Ensembl Acc Id: ENSMUST00000268668
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,204,861 - 26,212,849 (+)Ensembl
Ensembl Acc Id: ENSMUST00000268669
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,204,884 - 26,212,864 (+)Ensembl
Ensembl Acc Id: ENSMUST00000268670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,204,941 - 26,212,866 (+)Ensembl
Ensembl Acc Id: ENSMUST00000268671
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,205,017 - 26,212,872 (+)Ensembl
Ensembl Acc Id: ENSMUST00000268672
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,205,021 - 26,212,866 (+)Ensembl
Ensembl Acc Id: ENSMUST00000268673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,205,021 - 26,212,866 (+)Ensembl
Ensembl Acc Id: ENSMUST00000268674
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,204,514 - 26,207,548 (+)Ensembl
Ensembl Acc Id: ENSMUST00000268675
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,204,854 - 26,207,603 (+)Ensembl
Ensembl Acc Id: ENSMUST00000268676
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,204,854 - 26,207,544 (+)Ensembl
Ensembl Acc Id: ENSMUST00000268677
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,204,982 - 26,207,546 (+)Ensembl
RefSeq Acc Id: NR_166912
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391726,204,804 - 26,207,445 (+)NCBI
GRCm381725,985,830 - 25,988,471 (+)NCBI
Sequence:
RefSeq Acc Id: NR_166913
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391726,204,804 - 26,207,445 (+)NCBI
GRCm381725,985,830 - 25,988,471 (+)NCBI
Sequence:
RefSeq Acc Id: NR_168725
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391726,204,804 - 26,210,004 (+)NCBI
GRCm381725,985,830 - 25,991,030 (+)NCBI
Sequence:
Promoters
RGD ID:13675210
Promoter ID:EPDNEW_M21755
Type:initiation region
Name:KY467776_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381725,985,880 - 25,985,940EPDNEW
RGD ID:15094785
Promoter ID:EPDNEWNC_M2701
Type:multiple initiation site
Name:1700022N22Rik_1
Description:RIKEN cDNA 1700022N22 gene [Source:MGISymbol;Acc:MGI:1916681]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381725,985,880 - 25,985,940EPDNEWNC
RGD ID:6827670
Promoter ID:MM_KWN:22661
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:AK006250_1700022N22RIK,   ENSMUST00000041641,   UC008BCY.1,   UC008BDA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361726,122,521 - 26,123,252 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097523 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000235322 ENTREZGENE
MGD MGI:1916681 ENTREZGENE
NCBI Gene 69431 ENTREZGENE
PhenoGen 1700022N22Rik PhenoGen
RNAcentral URS0001BBE334 RNACentral
  URS0001BBE5C4 RNACentral
  URS0001BBE608 RNACentral