2310016D03Rik (RIKEN cDNA 2310016D03 gene)

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Gene: 2310016D03Rik (RIKEN cDNA 2310016D03 gene) Mus musculus

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Symbol:

2310016D03Rik

Name:

RIKEN cDNA 2310016D03 gene

RGD ID:

1610883

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

PREDICTED

Previously known as:

hypothetical protein LOC69566; uncharacterized protein LOC69566

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	30,460,558 - 30,517,357 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	30,445,806 - 30,517,445 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	30,410,559 - 30,467,358 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	30,410,559 - 30,467,358 (-)	Ensembl	GRCm38		mm10	GRCm38
Celera	12	31,866,580 - 31,923,528 (-)	NCBI		Celera
Cytogenetic Map	12	A2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:24316575

Genomics

Variants

Variants in 2310016D03Rik
2081 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301207	Circp1_m	circadian photosensitivity 1 (mouse)			Not determined		12	1	33430339	Mouse
1301723	Fcsa7_m	femoral cross-sectional area 7 (mouse)			Not determined		12	9491004	43491112	Mouse
15039339	Nmrs29_m	NAFLD-associated magnetic resonance shift 29 (mouse)					12	17825852	51825852	Mouse
1302172	Skts5_m	skin tumor susceptibility 5 (mouse)			Not determined		12	22148866	56149016	Mouse
1300636	Gct2_m	granulosa cell tumorigenesis 2 (mouse)			Not determined		12	29160685	63160884	Mouse
10043977	Obq34_m	obesity QTL 34 (mouse)			Not determined		12	15147331	49147331	Mouse
10043848	Hdlq90_m	HDL QTL 90 (mouse)			Not determined		12	17839939	51840081	Mouse
1558978	Cplaq10_m	circadian period of locomotor activity 10 (mouse)			Not determined		12	15341026	79040364	Mouse
1301574	Lmblgq5_m	limb length QTL 5 (mouse)			Not determined		12	17596447	80956883	Mouse
1300870	Ath18_m	atherosclerosis 18 (mouse)			Not determined		12	18259966	52260067	Mouse
13207568	Tcq14_m	total cholesterol QTL 14 (mouse)					12	11660001	97176774	Mouse
27226753	Femd7_m	femur midshaft diameter 7, 10 week (mouse)					12	9550000	84146774	Mouse
14747008	Mancz10_m	mandible centroid size 10 (mouse)					12	29863522	63863522	Mouse
4141660	Nbwa1_m	NZB and NZW autoimmunity 1 (mouse)			Not determined		12	340134	34340302	Mouse
4142234	Tmc1m3_m	Tmc1 modifier 3 (mouse)			Not determined		12	5418440	77031203	Mouse
13524843	Ppiq8_m	prepulse inhibition QTL 8 (mouse)					12	11043194	50945796	Mouse
26884413	Bzwq9_m	bi-zygomatic width QTL 9, 10 week (mouse)					12	16150001	47746783	Mouse
13524839	Ppiq10_m	prepulse inhibition QTL 10 (mouse)					12	13043195	54945798	Mouse
4141843	Moen3_m	modifier of engrailed QTL 3 (mouse)			Not determined		12	29801584	63801733	Mouse
13208568	Bmiq11_m	body mass index QTL 11 (mouse)					12	8050000	40049999	Mouse
4141516	slwr_m	slowlearner (mouse)			Not determined			12392475	46392614	Mouse
1301925	Ath6_m	atherosclerosis 6 (mouse)			Not determined		12	1	32758756	Mouse
1301989	Hdlq18_m	HDL QTL 18 (mouse)			Not determined		12	29160685	63160884	Mouse
1301163	Eae16_m	susceptibility to experimental allergic encephalomyelitis 16 (mouse)			Not determined		12	7723158	41723301	Mouse
12904956	Edlmmq10_m	extensor digitorum longus muscle mass QTL 10 (mouse)					12	19739833	53739833	Mouse
14746972	Manh72_m	mandible shape 72 (mouse)					12	10615281	44615281	Mouse
1301037	Cd4ts5_m	CD4 T cell subset 5 (mouse)			Not determined		12	8352444	42352581	Mouse
10401249	Bglu15_m	blood glucose level 15 (mouse)			Not determined		12	10620642	44620809	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_045491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC154485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK009380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000190206

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	30,460,557 - 30,517,400 (-)	Ensembl
GRCm38.p6 Ensembl	12	30,410,559 - 30,467,358 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000243079

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	30,445,806 - 30,517,445 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000356662

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	30,445,811 - 30,517,412 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000356663

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	30,445,811 - 30,517,400 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000356664

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	30,445,811 - 30,517,396 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000356665

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	30,445,813 - 30,517,382 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000356666

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	30,445,813 - 30,517,363 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000356667

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	30,445,813 - 30,517,335 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000356668

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	30,445,813 - 30,517,280 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000356669

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	30,445,811 - 30,517,273 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000356670

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	30,445,811 - 30,517,271 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000356671

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	30,454,776 - 30,517,400 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000356672

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	30,516,852 - 30,517,436 (-)	Ensembl

RefSeq Acc Id:

NR_045491

RefSeq Status:

PREDICTED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	12	30,460,558 - 30,517,357 (-)	NCBI
GRCm38	12	30,410,559 - 30,467,358 (-)	ENTREZGENE
Celera	12	31,866,580 - 31,923,528 (-)	ENTREZGENE
cM Map	12		ENTREZGENE

Sequence:

show sequence

GCTGTCCTCTACTGTCACCGCTGGATAGTGCAAAGGACCAGGAGCAGACTTGTATAATGACAAG
GCCTCGTGCAGATGAAGTGATTTTTCTTCCAAGGCAAGGCCCAGCTTGACAGTCTTGATCCTAC
CTCCAGACACCGTATGGTCGATAGATGTTTCAGAATTATTTTGTTCAGTAACAAAAGGCGTCTC
ACCTTGGAGCCCACATTTTCTTCCTCGGGAATGAAGTACACAGAGGTTGCAGCATGCAGTACTT
GAGACATCTCAGGAAGTAGAATAGCAGAGACTCACAGGCTGGGATCTACAAGGCTATGTCTCAT
GCACTACTCTACTTCTGGACTGAGGAACAGAGCTGTCTATCACCAGTATCAACTGAGAATTTCC
AGGATCTTGATTTGAGGATGCTTGGGTCCTTCTGTCCCTGAGCTGGCCACCTGTGCCTGACAAG
AGGACCAGAGAAGCTCAGCTACCAGAGGAGAGCAGACTCTTTAGGCAGTCATGGGGCAGCGCTT
TCAGATAGGCAGGAGGCTCCAGCTGACCACCCCAGTGCTTGACTGAATTCTGTGCCAGAAGTTC
TTGCAGAGCCACTACCAGTACAGATCTAGGCAAGGACACATAGGTCTCATAGGGCCAAAGTATG
GTAAGAGCTCACTGTAATAGTTCACTAGCTGCAGCCCATTATACCTGGAATGCCTTAAAAATCT
CCATTGCTATGTTCTGTTTTCAAGTATTTTCTCAGTAGACTCTATCCTCTGCCCCTTACAGATG
GAATGCAAACCCTACTCTCTGTCTTCTAAAGTGCCTGCCTTCTTCTCCCAGACATTCTCCTCTG
TCTGTTTTCCAGTACAGGGGTCATGTCTGTATGTATTTGGTGTTGTATTGTGGGAAAGATAAAG
AAGAAAAAGCAGAGGAACCCAATGAAACACAGTTTCTAAGCCCATCTCCATCCAGAACAGACTA
CTGACATCTTGTCATGCCCAACCCAGCTTGTTCTTGACATCTGTCATGTAATCCCCTCACACAA
GAATATACCAGGTATTTCTACCCTAGAAACATAGCCTGCTTCTCCTTGCAGGTGAAGTGACAGG
CTCTTCCTGTGATTTTACCTGGGTCACATCGAGTTTTTCTCCTAAAACTCTCCCCCGCCCCCAT
TGCACTAAAACCCAGTGATAATAAGGTGCACATTGCCAAATGCTTCTCGAGGATTTTCTCCTCT
ATTTTGAGGTCAATGCCTTCAGAACCATGTCTGGGTCCTGTCAGTGCCACATGCTCTCTAGAGC
CTTAGACAAAAGAATTGTCTGCAGTTGGCACAAAGTAATACTGTATTTACTTTAACTGGTTATC
CATCTATTAACACACTTTAAAGTAATAGATTTCCTTGTTTTTTTATCTTTATAACATACATTTA
CAAAGTGATAAGCATTTTAATATTCAATGACTTCTCTTCCATAAGCATTTCACCCACAGGATAA
ACACAGTAGTAGTTTCACAATTTTATTTGCATAATAGATTTAGAGGCTAACAAATAAACGGTAC
TGTGAACAAAC

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Promoters

RGD ID:

8678068

Promoter ID:

EPDNEW_M17065

Type:

initiation region

Name:

2310016D03Rik_1

Description:

Mus musculus RIKEN cDNA 2310016D03 gene , long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	12	30,467,397 - 30,467,457	EPDNEW

RGD ID:

15094093

Promoter ID:

EPDNEWNC_M1994

Type:

initiation region

Name:

2310016D03Rik_1

Description:

RIKEN cDNA 2310016D03 gene [Source:MGISymbol;Acc:MGI:1916816]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	12	30,467,397 - 30,467,457	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000102098	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000190206	ENTREZGENE
MGD	MGI:1916816	ENTREZGENE
NCBI Gene	69566	ENTREZGENE
PhenoGen	2310016D03Rik	PhenoGen
RNAcentral	URS000075DFAB	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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