Lce1d (late cornified envelope 1D) - Rat Genome Database
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Gene: Lce1d (late cornified envelope 1D) Rattus norvegicus
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Symbol: Lce1d
Name: late cornified envelope 1D
RGD ID: 1587794
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cellular response to calcium ion (ortholog); cognition (ortholog); FOUND IN cell periphery (ortholog); cornified envelope (ortholog); cytoplasm (ortholog); INTERACTS WITH bisphenol A; decabromodiphenyl ether; diuron
Type: protein-coding
Also known as: hypothetical protein LOC685981; LOC685981
RGD Orthologs
Human
Mouse
Bonobo
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.42185,677,116 - 185,677,723 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2171,991,668 - 171,992,275 (-)NCBICelera
Cytogenetic Map2q34NCBI


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11698679   PMID:21873635   PMID:23227193  


Genomics

Comparative Map Data
Lce1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.42185,677,116 - 185,677,723 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2171,991,668 - 171,992,275 (-)NCBICelera
Cytogenetic Map2q34NCBI
LCE1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1152,796,721 - 152,798,181 (+)EnsemblGRCh38hg38GRCh38
GRCh381152,796,721 - 152,798,181 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371152,769,227 - 152,770,657 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,035,851 - 151,037,281 (+)NCBINCBI36hg18NCBI36
Build 341149,583,343 - 149,583,688NCBI
Cytogenetic Map1q21.3NCBI
CHM1_11154,164,587 - 154,166,017 (+)NCBICHM1_1
Lce1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39392,592,806 - 92,594,517 (-)NCBIGRCm39mm39
GRCm38392,685,499 - 92,687,210 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl392,685,499 - 92,687,210 (-)EnsemblGRCm38mm10GRCm38
MGSCv37392,489,421 - 92,491,132 (-)NCBIGRCm37mm9NCBIm37
MGSCv36392,770,902 - 92,772,613 (-)NCBImm8
Celera394,396,805 - 94,398,516 (+)NCBICelera
Cytogenetic Map3F1NCBI
LCE1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11131,771,726 - 131,773,254 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01128,140,776 - 128,142,801 (+)NCBIMhudiblu_PPA_v0panPan3


Expression


Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: XM_001066061   ⟹   XP_001066061
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.42185,677,116 - 185,677,723 (+)RGD
RefSeq Acc Id: XM_002726006   ⟹   XP_002726052
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2171,991,668 - 171,992,275 (-)RGD

Additional Information

Database Acc Id Source(s)
NCBI Gene 685981 ENTREZGENE
PhenoGen Lce1d PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Lce1d  late cornified envelope 1D   Lce1d_predicted  late cornified envelope 1D (predicted)  'predicted' is removed 2292626 APPROVED
2007-04-11 Lce1d_predicted  late cornified envelope 1D (predicted)  LOC685981  hypothetical protein LOC685981  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2006-11-19 LOC685981  hypothetical protein LOC685981      Symbol and Name status set to provisional 70820 PROVISIONAL