Lce1d (late cornified envelope 1D) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Lce1d (late cornified envelope 1D) Rattus norvegicus
Analyze
Symbol: Lce1d
Name: late cornified envelope 1D
RGD ID: 1587794
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cellular response to calcium ion (ortholog); cognition (ortholog); FOUND IN cell periphery (ortholog); cornified envelope (ortholog); cytoplasm (ortholog); INTERACTS WITH bisphenol A; decabromodiphenyl ether; diuron
Type: protein-coding
Also known as: hypothetical protein LOC685981; LOC685981
RGD Orthologs
Human
Mouse
Bonobo
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.42185,677,116 - 185,677,723 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2171,991,668 - 171,992,275 (-)NCBICelera
Cytogenetic Map2q34NCBI


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11698679   PMID:21873635   PMID:23227193  


Genomics

Comparative Map Data
Lce1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.42185,677,116 - 185,677,723 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2171,991,668 - 171,992,275 (-)NCBICelera
Cytogenetic Map2q34NCBI
LCE1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1152,796,721 - 152,798,181 (+)EnsemblGRCh38hg38GRCh38
GRCh381152,796,721 - 152,798,181 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371152,769,227 - 152,770,657 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,035,851 - 151,037,281 (+)NCBINCBI36hg18NCBI36
Build 341149,583,343 - 149,583,688NCBI
Cytogenetic Map1q21.3NCBI
CHM1_11154,164,587 - 154,166,017 (+)NCBICHM1_1
Lce1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39392,592,806 - 92,594,517 (-)NCBIGRCm39mm39
GRCm38392,685,499 - 92,687,210 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl392,685,499 - 92,687,210 (-)EnsemblGRCm38mm10GRCm38
MGSCv37392,489,421 - 92,491,132 (-)NCBIGRCm37mm9NCBIm37
MGSCv36392,770,902 - 92,772,613 (-)NCBImm8
Celera394,396,805 - 94,398,516 (+)NCBICelera
Cytogenetic Map3F1NCBI
LCE1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11131,771,726 - 131,773,254 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01128,140,776 - 128,142,801 (+)NCBIMhudiblu_PPA_v0panPan3


Expression


Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: XM_001066061   ⟹   XP_001066061
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.42185,677,116 - 185,677,723 (+)RGD
RefSeq Acc Id: XM_002726006   ⟹   XP_002726052
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2171,991,668 - 171,992,275 (-)RGD

Additional Information

Database Acc Id Source(s)
NCBI Gene 685981 ENTREZGENE
PhenoGen Lce1d PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Lce1d  late cornified envelope 1D   Lce1d_predicted  late cornified envelope 1D (predicted)  'predicted' is removed 2292626 APPROVED
2007-04-11 Lce1d_predicted  late cornified envelope 1D (predicted)  LOC685981  hypothetical protein LOC685981  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2006-11-19 LOC685981  hypothetical protein LOC685981      Symbol and Name status set to provisional 70820 PROVISIONAL