LOC127894065 (H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60507695-60508426) - Rat Genome Database

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Gene: LOC127894065 (H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60507695-60508426) Homo sapiens
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Symbol: LOC127894065
Name: H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60507695-60508426
RGD ID: 155764017
Description: This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K27ac and H3K4me1 histone modifications. [provided by RefSeq, Dec 2022]
Type: biological-region
RefSeq Status: REVIEWED
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382061,932,637 - 61,933,368 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372060,507,695 - 60,508,426 (+)NCBIGRCh37GRCh37hg19GRCh37
T2T-CHM13v2.02063,723,697 - 63,724,428 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30033119  


Genomics

Variants

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Variants in LOC127894065
7 total Variants

QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2292864PRSTS43_HProstate tumor susceptibility QTL 43 (human)0.620.05Prostate tumor susceptibility204730303964444167Human
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
407000340GWAS649316_Hsystolic blood pressure QTL GWAS649316 (human)5e-08systolic blood pressuresystolic blood pressure (CMO:0000004)206193323161933232Human
406957622GWAS606598_HIGFBP-3 measurement QTL GWAS606598 (human)0.0000001IGFBP-3 measurement206193312461933125Human
406957612GWAS606588_HCCL2 measurement QTL GWAS606588 (human)0.000004CCL2 measurement206193312461933125Human


Expression

RNA-SEQ Expression


Sequence



Additional Information

Database Acc Id Source(s)
COSMIC LOC127894065 COSMIC
GTEx LOC127894065 GTEx
Human Proteome Map LOC127894065 Human Proteome Map
NCBI Gene LOC127894065 ENTREZGENE