Rbms3 (RNA binding motif, single stranded interacting protein) - Rat Genome Database
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Gene: Rbms3 (RNA binding motif, single stranded interacting protein) Mus musculus
Analyze
Symbol: Rbms3
Name: RNA binding motif, single stranded interacting protein
RGD ID: 1557443
MGI Page MGI
Description: Exhibits mRNA 3'-UTR binding activity. Involved in positive regulation of translation. Predicted to localize to cytosol; nucleus; and ribonucleoprotein complex. Is expressed in several structures, including genitourinary system; gut; liver; and nervous system. Orthologous to human RBMS3 (RNA binding motif single stranded interacting protein 3); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 6720477E09Rik; 8430436O14Rik; hypothetical protein LOC71506; MGC118437; RIKEN cDNA 8430436O14 gene; RNA binding motif, single stranded interacting protein 3; RNA-binding motif, single-stranded-interacting protein 3; RNA-binding protein RBMS3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399116,401,814 - 117,869,900 (-)NCBIGRCm39mm39
GRCm389116,572,746 - 117,629,913 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9116,572,746 - 117,872,584 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl9116,572,746 - 117,872,681 (-)EnsemblGRCm38mm10GRCm38
MGSCv379116,481,864 - 117,539,031 (-)NCBIGRCm37mm9NCBIm37
MGSCv369116,426,294 - 117,100,841 (-)NCBImm8
Celera9117,033,624 - 118,099,798 (-)NCBICelera
Cytogenetic Map9F3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:15489334   PMID:16033648   PMID:16141072   PMID:16141073   PMID:16602821   PMID:18973680   PMID:21677750  
PMID:21873635   PMID:22372950  


Genomics

Comparative Map Data
Rbms3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399116,401,814 - 117,869,900 (-)NCBIGRCm39mm39
GRCm389116,572,746 - 117,629,913 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9116,572,746 - 117,872,584 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl9116,572,746 - 117,872,681 (-)EnsemblGRCm38mm10GRCm38
MGSCv379116,481,864 - 117,539,031 (-)NCBIGRCm37mm9NCBIm37
MGSCv369116,426,294 - 117,100,841 (-)NCBImm8
Celera9117,033,624 - 118,099,798 (-)NCBICelera
Cytogenetic Map9F3NCBI
RBMS3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl328,574,791 - 30,010,391 (+)EnsemblGRCh38hg38GRCh38
GRCh38329,280,860 - 30,010,395 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37329,322,351 - 30,051,886 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36329,297,947 - 30,021,624 (+)NCBINCBI36hg18NCBI36
Build 34329,297,946 - 30,007,813NCBI
Celera329,259,697 - 29,988,619 (+)NCBI
Cytogenetic Map3p24.1NCBI
HuRef329,264,107 - 29,994,199 (+)NCBIHuRef
CHM1_1329,272,966 - 30,002,039 (+)NCBICHM1_1
Rbms3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08124,833,804 - 125,645,895 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8124,661,839 - 125,645,898 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08124,098,342 - 125,493,242 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48121,107,780 - 121,821,324 (-)NCBIRGSC3.4rn4RGSC3.4
Celera8115,563,571 - 116,289,351 (-)NCBICelera
Cytogenetic Map8q32NCBI
Rbms3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543020,320,085 - 21,387,681 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543020,714,647 - 21,394,049 (+)NCBIChiLan1.0ChiLan1.0
RBMS3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1329,493,909 - 30,251,572 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl329,494,280 - 30,245,021 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0328,460,921 - 29,931,862 (+)NCBIMhudiblu_PPA_v0panPan3
RBMS3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2314,454,759 - 15,136,654 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12314,448,399 - 15,733,941 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rbms3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647320,169,383 - 20,828,355 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBMS3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1315,711,425 - 16,462,750 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11314,968,921 - 16,458,470 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21316,934,391 - 17,687,893 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBMS3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11573,084,392 - 74,535,601 (+)NCBI
Rbms3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247887,035,449 - 7,847,614 (+)NCBI

Position Markers
RH136029  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389117,171,306 - 117,171,507UniSTSGRCm38
MGSCv379117,080,424 - 117,080,625UniSTSGRCm37
Celera9117,633,254 - 117,633,455UniSTS
Cytogenetic Map9F3UniSTS
RH132871  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389116,572,815 - 116,572,966UniSTSGRCm38
MGSCv379116,481,933 - 116,482,084UniSTSGRCm37
Celera9117,033,693 - 117,033,844UniSTS
Cytogenetic Map9F3UniSTS
Rbms3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9F3UniSTS
cM Map9 UniSTS
D9Mit201  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389117,436,166 - 117,436,273UniSTSGRCm38
MGSCv379117,345,284 - 117,345,391UniSTSGRCm37
Celera9117,903,761 - 117,903,868UniSTS
Cytogenetic Map9F3UniSTS
cM Map965.0UniSTS
Whitehead Genetic963.4UniSTS
Whitehead_YAC9 UniSTS
D9Mit56  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389117,346,072 - 117,346,177UniSTSGRCm38
MGSCv379117,255,190 - 117,255,295UniSTSGRCm37
Celera9117,811,974 - 117,812,079UniSTS
Cytogenetic Map9F3UniSTS
cM Map965.0UniSTS
Whitehead Genetic963.4UniSTS
Whitehead/MRC_RH91160.22UniSTS
Whitehead_YAC9 UniSTS
D9Dcr130  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389117,193,422 - 117,193,517UniSTSGRCm38
MGSCv379117,102,540 - 117,102,635UniSTSGRCm37
Celera9117,655,225 - 117,655,318UniSTS
Cytogenetic Map9F3UniSTS
cM Map9 UniSTS
UniSTS:236276  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389116,572,980 - 116,573,280UniSTSGRCm38
MGSCv379116,482,098 - 116,482,398UniSTSGRCm37
Celera9117,033,858 - 117,034,158UniSTS
Cytogenetic Map9F3UniSTS
UniSTS:224966  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389116,724,793 - 116,724,981UniSTSGRCm38
MGSCv379116,633,911 - 116,634,099UniSTSGRCm37
Celera9117,186,466 - 117,186,654UniSTS
Cytogenetic Map9F3UniSTS
D9Jpk2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389117,134,460 - 117,134,575UniSTSGRCm38
MGSCv379117,043,578 - 117,043,693UniSTSGRCm37
Celera9117,592,402 - 117,592,521UniSTS
Cytogenetic Map9F3UniSTS
cM Map966.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse
13515058Adip20d_madiposity 20d (mouse)9108915010118915010Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3910
Count of miRNA genes:870
Interacting mature miRNAs:1199
Transcripts:ENSMUST00000044901, ENSMUST00000068962, ENSMUST00000069095, ENSMUST00000084824, ENSMUST00000111772, ENSMUST00000111773, ENSMUST00000164018, ENSMUST00000172469, ENSMUST00000172564, ENSMUST00000173429, ENSMUST00000174276, ENSMUST00000174868
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001172121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001172122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001172123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001172124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001172126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA388019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC098731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC126928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC134893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC138313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC160989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC162920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC165253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV382248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE136226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000044901   ⟹   ENSMUSP00000039706
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9116,578,515 - 117,252,483 (-)Ensembl
RefSeq Acc Id: ENSMUST00000068962   ⟹   ENSMUSP00000066735
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9116,577,299 - 117,252,479 (-)Ensembl
RefSeq Acc Id: ENSMUST00000069095
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9116,678,273 - 117,252,482 (-)Ensembl
RefSeq Acc Id: ENSMUST00000084824
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9116,943,123 - 117,251,597 (-)Ensembl
RefSeq Acc Id: ENSMUST00000111772   ⟹   ENSMUSP00000107402
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9116,578,026 - 117,252,117 (-)Ensembl
RefSeq Acc Id: ENSMUST00000111773   ⟹   ENSMUSP00000107403
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9116,572,746 - 117,252,463 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164018   ⟹   ENSMUSP00000131371
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9116,578,025 - 117,629,913 (-)Ensembl
RefSeq Acc Id: ENSMUST00000172469   ⟹   ENSMUSP00000134172
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9116,582,822 - 116,822,819 (-)Ensembl
RefSeq Acc Id: ENSMUST00000172564   ⟹   ENSMUSP00000134528
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9116,805,413 - 117,251,801 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173429   ⟹   ENSMUSP00000133900
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9116,577,582 - 116,822,806 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174276
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9116,848,247 - 117,252,479 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174868   ⟹   ENSMUSP00000133621
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9116,578,025 - 117,252,126 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210659
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9117,708,192 - 117,872,584 (-)Ensembl
RefSeq Acc Id: ENSMUST00000239475   ⟹   ENSMUSP00000159354
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9116,578,025 - 117,872,681 (-)Ensembl
RefSeq Acc Id: NM_001172121   ⟹   NP_001165592
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399116,401,814 - 117,458,981 (-)NCBI
GRCm389116,572,746 - 117,629,913 (-)NCBI
MGSCv379116,481,864 - 117,539,031 (-)RGD
Celera9117,033,624 - 118,099,798 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001172122   ⟹   NP_001165593
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399116,401,814 - 117,081,551 (-)NCBI
GRCm389116,572,746 - 117,252,483 (-)NCBI
MGSCv379116,481,864 - 117,539,031 (-)RGD
Celera9117,033,624 - 118,099,798 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001172123   ⟹   NP_001165594
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399116,401,814 - 117,081,551 (-)NCBI
GRCm389116,572,746 - 117,252,483 (-)NCBI
MGSCv379116,481,864 - 117,539,031 (-)RGD
Celera9117,033,624 - 118,099,798 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001172124   ⟹   NP_001165595
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399116,401,814 - 117,081,551 (-)NCBI
GRCm389116,572,746 - 117,252,483 (-)NCBI
MGSCv379116,481,864 - 117,539,031 (-)RGD
Celera9117,033,624 - 118,099,798 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001172126   ⟹   NP_001165597
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399116,401,814 - 117,081,551 (-)NCBI
GRCm389116,572,746 - 117,252,483 (-)NCBI
MGSCv379116,481,864 - 117,539,031 (-)RGD
Celera9117,033,624 - 118,099,798 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_178660   ⟹   NP_848775
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399116,401,814 - 117,081,551 (-)NCBI
GRCm389116,572,746 - 117,252,483 (-)NCBI
MGSCv379116,481,864 - 117,539,031 (-)RGD
Celera9117,033,624 - 118,099,798 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017313251   ⟹   XP_017168740
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399116,401,818 - 117,082,419 (-)NCBI
GRCm389116,572,750 - 117,252,718 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313252   ⟹   XP_017168741
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399116,401,818 - 117,082,419 (-)NCBI
GRCm389116,572,750 - 117,253,351 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313253   ⟹   XP_017168742
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399116,401,818 - 117,082,419 (-)NCBI
GRCm389116,572,750 - 117,253,351 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244162   ⟹   XP_030100022
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399116,401,818 - 117,080,788 (-)NCBI
GRCm389116,572,746 - 117,251,720 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154757   ⟹   XP_036010650
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399116,401,818 - 117,701,670 (-)NCBI
RefSeq Acc Id: XM_036154758   ⟹   XP_036010651
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399117,534,734 - 117,869,900 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001165592 (Get FASTA)   NCBI Sequence Viewer  
  NP_001165593 (Get FASTA)   NCBI Sequence Viewer  
  NP_001165594 (Get FASTA)   NCBI Sequence Viewer  
  NP_001165595 (Get FASTA)   NCBI Sequence Viewer  
  NP_001165597 (Get FASTA)   NCBI Sequence Viewer  
  NP_848775 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168740 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168741 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168742 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100022 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010650 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010651 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH33604 (Get FASTA)   NCBI Sequence Viewer  
  AAI08403 (Get FASTA)   NCBI Sequence Viewer  
  AAI17841 (Get FASTA)   NCBI Sequence Viewer  
  AAI17842 (Get FASTA)   NCBI Sequence Viewer  
  BAC26980 (Get FASTA)   NCBI Sequence Viewer  
  BAC27045 (Get FASTA)   NCBI Sequence Viewer  
  BAC28091 (Get FASTA)   NCBI Sequence Viewer  
  BAC28122 (Get FASTA)   NCBI Sequence Viewer  
  BAC30820 (Get FASTA)   NCBI Sequence Viewer  
  BAC32633 (Get FASTA)   NCBI Sequence Viewer  
  BAC34763 (Get FASTA)   NCBI Sequence Viewer  
  BAC34878 (Get FASTA)   NCBI Sequence Viewer  
  BAC38374 (Get FASTA)   NCBI Sequence Viewer  
  BAE36928 (Get FASTA)   NCBI Sequence Viewer  
  EDL09262 (Get FASTA)   NCBI Sequence Viewer  
  EDL09263 (Get FASTA)   NCBI Sequence Viewer  
  EDL09264 (Get FASTA)   NCBI Sequence Viewer  
  EDL09265 (Get FASTA)   NCBI Sequence Viewer  
  EDL09266 (Get FASTA)   NCBI Sequence Viewer  
  EDL09267 (Get FASTA)   NCBI Sequence Viewer  
  EDL09268 (Get FASTA)   NCBI Sequence Viewer  
  Q8BWL5 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_848775   ⟸   NM_178660
- Peptide Label: isoform 3
- UniProtKB: Q8BWL5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001165592   ⟸   NM_001172121
- Peptide Label: isoform 4
- UniProtKB: Q8BWL5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001165593   ⟸   NM_001172122
- Peptide Label: isoform 2
- UniProtKB: Q8BWL5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001165594   ⟸   NM_001172123
- Peptide Label: isoform 1
- UniProtKB: Q8BWL5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001165595   ⟸   NM_001172124
- Peptide Label: isoform 5
- UniProtKB: Q8BWL5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001165597   ⟸   NM_001172126
- Peptide Label: isoform 6
- UniProtKB: Q8BWL5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017168742   ⟸   XM_017313253
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017168741   ⟸   XM_017313252
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017168740   ⟸   XM_017313251
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030100022   ⟸   XM_030244162
- Peptide Label: isoform X6
RefSeq Acc Id: ENSMUSP00000107402   ⟸   ENSMUST00000111772
RefSeq Acc Id: ENSMUSP00000107403   ⟸   ENSMUST00000111773
RefSeq Acc Id: ENSMUSP00000131371   ⟸   ENSMUST00000164018
RefSeq Acc Id: ENSMUSP00000066735   ⟸   ENSMUST00000068962
RefSeq Acc Id: ENSMUSP00000134528   ⟸   ENSMUST00000172564
RefSeq Acc Id: ENSMUSP00000134172   ⟸   ENSMUST00000172469
RefSeq Acc Id: ENSMUSP00000159354   ⟸   ENSMUST00000239475
RefSeq Acc Id: ENSMUSP00000133621   ⟸   ENSMUST00000174868
RefSeq Acc Id: ENSMUSP00000133900   ⟸   ENSMUST00000173429
RefSeq Acc Id: ENSMUSP00000039706   ⟸   ENSMUST00000044901
RefSeq Acc Id: XP_036010650   ⟸   XM_036154757
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036010651   ⟸   XM_036154758
- Peptide Label: isoform X2
Protein Domains
RRM

Promoters
RGD ID:6845061
Promoter ID:MM_KWN:59072
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000084824,   LINCRNA_1074,   NM_001172122,   NM_001172123,   NM_001172124,   NM_001172126,   NM_178660,   UC009RZB.1,   UC009RZC.1,   UC009RZD.1,   UC009RZE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369117,159,601 - 117,161,832 (-)MPROMDB
RGD ID:8671148
Promoter ID:EPDNEW_M13605
Type:multiple initiation site
Name:Rbms3_1
Description:Mus musculus RNA binding motif, single stranded interacting protein, transcript variant 6, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389117,252,478 - 117,252,538EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444477 AgrOrtholog
Ensembl Genes ENSMUSG00000039607 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000039706 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000066735 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000107402 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000107403 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000131371 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000133621 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000133900 UniProtKB/TrEMBL
  ENSMUSP00000134172 UniProtKB/TrEMBL
  ENSMUSP00000134528 UniProtKB/TrEMBL
  ENSMUSP00000159354 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000044901 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000068962 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000111772 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000111773 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000164018 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000172469 UniProtKB/TrEMBL
  ENSMUST00000172564 UniProtKB/TrEMBL
  ENSMUST00000173429 UniProtKB/TrEMBL
  ENSMUST00000174868 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000239475 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Hud_Sxl_RNA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBMS3_RRM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:207181 UniProtKB/Swiss-Prot
MGD MGI:2444477 ENTREZGENE
NCBI Gene 207181 ENTREZGENE
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rbms3 PhenoGen
PRINTS HUDSXLRNA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.326411 ENTREZGENE
UniProt A0A6I8MX12_MOUSE UniProtKB/TrEMBL
  A4FUV1_MOUSE UniProtKB/TrEMBL
  G3UY10_MOUSE UniProtKB/TrEMBL
  G3UYP9_MOUSE UniProtKB/TrEMBL
  G3UZJ9_MOUSE UniProtKB/TrEMBL
  Q3TRU8_MOUSE UniProtKB/TrEMBL
  Q8BKJ2_MOUSE UniProtKB/TrEMBL
  Q8BUX2_MOUSE UniProtKB/TrEMBL
  Q8BWL5 ENTREZGENE
  Q8K256_MOUSE UniProtKB/TrEMBL
  RBMS3_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q2VPR0 UniProtKB/Swiss-Prot
  Q8BL73 UniProtKB/Swiss-Prot
  Q8BLW6 UniProtKB/Swiss-Prot
  Q8BMA7 UniProtKB/Swiss-Prot
  Q8BMB5 UniProtKB/Swiss-Prot
  Q8BML0 UniProtKB/Swiss-Prot
  Q8BMN1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Rbms3  RNA binding motif, single stranded interacting protein  8430436O14Rik  RIKEN cDNA 8430436O14 gene  Data Merged 737654 PROVISIONAL