2310002L09Rik (RIKEN cDNA 2310002L09 gene) - Rat Genome Database

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Gene: 2310002L09Rik (RIKEN cDNA 2310002L09 gene) Mus musculus
Analyze
No known orthologs.
Symbol: 2310002L09Rik
Name: RIKEN cDNA 2310002L09 gene
RGD ID: 1552810
MGI Page MGI
Description: Located in mitochondrion.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310003M01Rik; AV083437; expressed sequence AV083437; hypothetical protein LOC71886; MGC144293; MGC144294; uncharacterized protein LOC71886
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39473,857,608 - 73,869,111 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl473,857,608 - 73,869,083 (-)EnsemblGRCm39 Ensembl
GRCm38473,939,371 - 73,950,874 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl473,939,371 - 73,950,846 (-)EnsemblGRCm38mm10GRCm38
MGSCv37473,585,275 - 73,596,750 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36473,410,602 - 73,422,077 (-)NCBIMGSCv36mm8
Celera472,463,548 - 72,475,015 (-)NCBICelera
Cytogenetic Map4C3NCBI
cM Map436.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:16141072   PMID:16141073   PMID:18614015   PMID:21873635  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:467
Count of miRNA genes:313
Interacting mature miRNAs:367
Transcripts:ENSMUST00000030101, ENSMUST00000095023, ENSMUST00000149981
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46571808699718086Mouse
25314308Mlh1fc1_mMLH1 foci count 1 (mouse)44850000076918237Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined471982069105982216Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
27095938Ulnl6_mulna length 6, 10 week (mouse)46671823798588237Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
10043964Obq26_mobesity QTL 26 (mouse)Not determined45904725193047251Mouse
1301941Mmtg1_mmodifier of mammary tumor growth 1 (mouse)Not determined44565844283099157Mouse
13524841Hbasrq1_mhabituation of the acoustic startle response QTL 1 (mouse)45447158988471589Mouse
13524838Hbasrq1a_mhabituation of the acoustic startle response QTL 1a (mouse)45447158988471589Mouse
12879977Bod2_mbone length and organs 2 (mouse)44628353180283678Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
1301033Abbp2_mA/J and C57BL/6 blood pressure 2 (mouse)Not determined45355083993763305Mouse
1357870Pfat1_mpredicted fat percentage 1 (mouse)Not determined46361952697619685Mouse
1302057Pgia27_mproteoglycan induced arthritis 27 (mouse)Not determined470067227104067464Mouse
11532688Mh_mmodifier of hemostasis (mouse)44830477582304775Mouse
27095900Scvln9_msacral vertebrae length 2, 10 week (mouse)468018237107157197Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
4141810Ccmp4_mcerebellar cAMP 4 (mouse)Not determined46710026280769973Mouse
1301213Lgth3_mbody length 3 (mouse)Not determined45010026284100408Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
12880404Embq1_memotional behavior QTL 1 (mouse)46575720395921546Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1301190Cd4ts2_mCD4 T cell subset 2 (mouse)Not determined46014527794145424Mouse
1357507Synch2_msynechia 2 (mouse)Not determined46014527794145424Mouse
12879903Berr8_mberghei resistance locus 8 (mouse)46422246098222460Mouse
13207572Spir2_mStreptococcus pneumoniae infection resistance 2 (mouse)45068279588510637Mouse
12879897Berr4_mberghei resistance locus 4 (mouse)471982069105982216Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
10449022Aanq1_maristolochic acid nephrotoxicity QTL 1 (mouse)44660382680603826Mouse
27095934Ulnl2_mulna length 2, 5 week (mouse)45770000094788237Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
1357561Mbsyd_mmetabolic syndrome (mouse)Not determined466888445100888588Mouse
1301757Tlsr4_mthymic lymphoma suppressor region 4 (mouse)Not determined466757130100757258Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
10043880Adip23_madiposity 23 (mouse)Not determined44628353180283678Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
1301995Lprm1_mlymphoproliferation modifier 1 (mouse)Not determined45010026284100408Mouse
1301739Pitm2_mprion incubation time 2 (mouse)Not determined471982069105982216Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse

Markers in Region
AV083437  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38473,939,421 - 73,939,567UniSTSGRCm38
MGSCv37473,585,325 - 73,585,471UniSTSGRCm37
Celera472,463,598 - 72,463,744UniSTS
Cytogenetic Map4C3UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000030101   ⟹   ENSMUSP00000030101
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl473,857,608 - 73,869,083 (-)Ensembl
GRCm38.p6 Ensembl473,939,371 - 73,950,846 (-)Ensembl
Ensembl Acc Id: ENSMUST00000095023   ⟹   ENSMUSP00000092633
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl473,859,816 - 73,869,082 (-)Ensembl
GRCm38.p6 Ensembl473,941,579 - 73,950,845 (-)Ensembl
Ensembl Acc Id: ENSMUST00000149981
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl473,857,608 - 73,860,038 (-)Ensembl
GRCm38.p6 Ensembl473,939,371 - 73,941,801 (-)Ensembl
RefSeq Acc Id: NM_027104   ⟹   NP_081380
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39473,857,608 - 73,869,083 (-)NCBI
GRCm38473,939,371 - 73,950,846 (-)NCBI
MGSCv37473,585,275 - 73,596,750 (-)RGD
Celera472,463,548 - 72,475,015 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_027981   ⟹   NP_082257
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39473,859,816 - 73,869,083 (-)NCBI
GRCm38473,941,579 - 73,950,846 (-)NCBI
MGSCv37473,585,275 - 73,596,750 (-)RGD
Celera472,463,548 - 72,475,015 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_390343
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39473,857,608 - 73,869,111 (-)NCBI
GRCm38473,939,371 - 73,950,874 (-)NCBI
Sequence:
RefSeq Acc Id: NP_081380   ⟸   NM_027104
- Peptide Label: isoform 2
- UniProtKB: Q14C20 (UniProtKB/TrEMBL),   Q14C21 (UniProtKB/TrEMBL),   Q9D7M6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_082257   ⟸   NM_027981
- Peptide Label: isoform 1
- UniProtKB: Q14C21 (UniProtKB/TrEMBL),   Q9D7L5 (UniProtKB/TrEMBL),   Q9D7M6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000092633   ⟸   ENSMUST00000095023
Ensembl Acc Id: ENSMUSP00000030101   ⟸   ENSMUST00000030101

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D7L5-F1-model_v2 AlphaFold Q9D7L5 1-217 view protein structure

Promoters
RGD ID:6883706
Promoter ID:EPDNEW_M5304
Type:initiation region
Name:2310002L09Rik_1
Description:Mus musculus RIKEN cDNA 2310002L09 gene , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38473,950,845 - 73,950,905EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916780 AgrOrtholog
Ensembl Genes ENSMUSG00000028396 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030101 ENTREZGENE
  ENSMUST00000030101.4 UniProtKB/TrEMBL
  ENSMUST00000095023 ENTREZGENE
  ENSMUST00000095023.2 UniProtKB/TrEMBL
KEGG Report mmu:71886 UniProtKB/TrEMBL
MGD MGI:1916780 ENTREZGENE
NCBI Gene 2310002L09Rik ENTREZGENE
PhenoGen 2310002L09Rik PhenoGen
UniProt Q14C20 ENTREZGENE, UniProtKB/TrEMBL
  Q14C21 ENTREZGENE, UniProtKB/TrEMBL
  Q9D7L5 ENTREZGENE, UniProtKB/TrEMBL
  Q9D7M6 ENTREZGENE, UniProtKB/TrEMBL