Gm52479 (predicted gene, 52479) - Rat Genome Database
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Summary
References
Genomics
QTLs in Region (GRCm39)
Expression
RNA-SEQ Expression
Sequence
Nucleotide Sequences
Reference Sequences
Additional Information
External Database Links
Gene: Gm52479 (predicted gene, 52479) Mus musculus
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Analyze
General
Array IDs
Symbol:
Gm52479 (Ensembl: AL670181.1)
Name:
predicted gene, 52479
RGD ID:
15020355
MGI Page
MGI
Description:
Type:
pseudo (Ensembl: snRNA)
RefSeq Status:
MODEL
Latest Assembly:
GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse Assembly
Chr
Position (strand)
Source
Genome Browsers
JBrowse
NCBI
UCSC
Ensembl
GRCm39
X
88,045,630 - 88,045,762 (+)
NCBI
GRCm39
GRCm39
mm39
GRCm39 Ensembl
X
88,045,630 - 88,045,762 (+)
Ensembl
GRCm39 Ensembl
GRCm38
X
89,002,024 - 89,002,156 (+)
NCBI
GRCm38
GRCm38
mm10
GRCm38
Cytogenetic Map
X
C1
NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Annotation
Click to see Annotation Summary View
References
Genomics
.
QTLs in Region (GRCm39)
1 to 10 of 14 rows
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The following
QTLs
overlap with this region.
Full Report
CSV
TAB
Printer
Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4141630
Gct6_m
granulosa cell tumorigenesis 6 (mouse)
Not determined
47179121
129764756
Mouse
13464140
Hdlq108_m
HDL QTL 108 (mouse)
X
57771960
91771960
Mouse
25314311
Syncl3_m
synaptonemal complex length 3 (mouse)
X
51988877
89743606
Mouse
13824980
Ferq1_m
genetic fertility QTL 1 (mouse)
X
54045360
148782996
Mouse
1357500
Mdmsc6_m
modifier of muscularity 6 (mouse)
Not determined
X
75306671
109306758
Mouse
12879918
Shm4_m
sperm head morphology 4 (mouse)
X
72072050
102062720
Mouse
25314318
Sccor2_m
synaptonemal complex length to mean MLH1 count ratio 2 (mouse)
X
70543606
96543606
Mouse
1357433
Dbts2_m
diabetes 2 (mouse)
Not determined
X
7226295
150107038
Mouse
25314316
Mlh1fc3_m
MLH1 foci count 3 (mouse)
X
61343606
89843606
Mouse
10412108
Desp5_m
despair 5 (mouse)
Not determined
X
54722351
88722351
Mouse
4141803
Lmr30_m
leishmaniasis resistance 30 (mouse)
Not determined
85062606
119062720
Mouse
1302054
Gct4_m
granulosa cell tumorigenesis 4 (mouse)
Not determined
X
76124336
102062720
Mouse
11075102
Modc2_m
modifier of Odc2 (mouse)
X
80189914
114190059
Mouse
4141665
Mhysq2_m
male hybrid sterility QTL 2 (mouse)
Not determined
71453852
139203212
Mouse
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Expression
RNA-SEQ Expression
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
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Strain/Cell Line
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Sex
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Age
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Tissue
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Geo Sample Id
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Value
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Unit
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Assembly
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Reference
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Sequence
Nucleotide Sequences
1 to 1 of 1 rows
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GenBank Nucleotide
AL670181
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
1 to 1 of 1 rows
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Reference Sequences
0 to 0 of 0 rows
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Ensembl Acc Id:
ENSMUST00000239923
Type:
CODING
Position:
Mouse Assembly
Chr
Position (strand)
Source
GRCm39 Ensembl
X
88,045,630 - 88,045,762 (+)
Ensembl
0 to 0 of 0 rows
3
5
10
20
100
All Rows
Additional Information
External Database Links
1 to 4 of 4 rows
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Database
Acc Id
Source(s)
Ensembl Genes
ENSMUSG00000119070
Ensembl
MGD
MGI:6366690
ENTREZGENE
NCBI Gene
Gm52479
ENTREZGENE
PhenoGen
Gm52479
PhenoGen
1 to 4 of 4 rows
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