Gm51809 (predicted gene, 51809) - Rat Genome Database

Name: Gm51809
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gm51809 (predicted gene, 51809) Mus musculus

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Symbol:

Gm51809

Name:

predicted gene, 51809

RGD ID:

15018239

MGI Page

MGI

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	80,166,293 - 80,169,019 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm38	10	80,330,459 - 80,333,185 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Cytogenetic Map	10	C1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in Gm51809
63 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1302035	Lmb4_m	lupus in MRL and B6 F2 cross (mouse)			Not determined		10	66848187	92258673	Mouse
1300882	Ath17_m	atherosclerosis 17 (mouse)			Not determined		10	51091490	85091639	Mouse
4142137	Femwf3_m	femur work to failure 3 (mouse)			Not determined			75338568	109338767	Mouse
1301787	Bsc1_m	brain size control 1 (mouse)			Not determined		10	58516969	92517096	Mouse
27226772	Tibl13_m	tibia length 13, 10 week (mouse)					10	18875748	129635869	Mouse
14746991	Manh68_m	mandible shape 68 (mouse)					10	52280497	86280497	Mouse
4142380	W3q11_m	weight 3 weeks QTL 11 (mouse)			Not determined			12704051	84079784	Mouse
27226764	Tibl19_m	tibia length 19, 16 week (mouse)					10	39175996	129635869	Mouse
1357825	Kidpq2_m	kidney weight percentage QTL 2 (mouse)			Not determined		10	12704051	84079784	Mouse
1302150	Bbaa18_m	B.burgdorferi-associated arthritis 18 (mouse)			Not determined		10	49338012	83338157	Mouse
1301380	Cia8_m	collagen induced arthritis QTL 8 (mouse)			Not determined		10	51493400	82491121	Mouse
1301386	Sysbp1_m	systolic blood pressure 1 (mouse)			Not determined		10	10108265	87401095	Mouse
1302067	Scc9_m	colon tumor susceptibility 9 (mouse)			Not determined		10	18259333	125575232	Mouse
26884411	Bzwq8_m	bi-zygomatic width QTL 8, 10 week (mouse)					10	44876096	115935905	Mouse
11039497	Ltpr5a_m	Leishmania tropica response 5a (mouse)					10	73506901	107507047	Mouse
4142107	Obrq12_m	obesity resistance QTL 12 (mouse)			Not determined			73987216	82491121	Mouse
1300533	Aem3_m	anti-erythrocyte autoantibody modifier 3 (mouse)			Not determined		10	65490938	99491121	Mouse
26884403	Cvht8_m	cranial vault height 8, 16 week (mouse)					10	22875899	91035862	Mouse
26884407	Bzwq14_m	bi-zygomatic width QTL 14, 16 wee (mouse)					10	45476096	120635905	Mouse
11251717	Siim1_m	stress induced immobility 1 (mouse)					10	78381268	112381268	Mouse
26884405	Huml2_m	humerus length 2, 5 week (mouse)					10	69735830	130430862	Mouse
1357740	Obsty3_m	obesity 3 (mouse)			Not determined		10	8235478	116190980	Mouse
13208560	Wght9_m	weight 9 (mouse)					10	59835822	120835905	Mouse
4141956	Egq7_m	early growth QTL 7 (mouse)			Not determined			12704051	84079784	Mouse
1357864	Scfpq1_m	subcutaneous fat pad percentage QTL 1 (mouse)			Not determined		10	12704051	84079784	Mouse
1357737	Hpcr2_m	hepatocarcinogen resistance 2 (mouse)			Not determined		10	49848222	83848397	Mouse
1302060	El3_m	epilepsy 3 (mouse)			Not determined		10	65490938	99491121	Mouse
39128215	Lwq17_m	liver weight QTL 17 (mouse)					10	12704051	84079784	Mouse
26884447	Sklq9_m	skull length QTL 9, 10 week (mouse)					10	67335830	111735905	Mouse
11353832	Pcholq4_m	plasma cholesterol QTL 4 (mouse)					10	73987216	125515907	Mouse
4141943	W6q6_m	weight 6 weeks QTL 6 (mouse)			Not determined			12704051	84079784	Mouse
1357656	Hrtq3_m	heart weight QTL 3 (mouse)			Not determined		10	12704051	84079784	Mouse
26884426	Cvht1_m	cranial vault height 1, 5 week (mouse)					10	24675898	121035905	Mouse
10045641	Jckm3_m	juvenile cystic kidney modifier 3 (mouse)			Not determined		10	49848187	83848412	Mouse
26884424	Zlq9_m	zygomatic length QTL 9, 16 week (mouse)					10	63935779	115935905	Mouse
26884430	Zlq5_m	zygomatic length QTL 5, 10 week (mouse)					10	67835830	124835905	Mouse
1357632	Vtbt9_m	vertebral trabecular bone trait 9 (mouse)			Not determined		10	75338568	109338767	Mouse
4142313	Angvq1_m	angiogenesis by VEGF QTL 1 (mouse)			Not determined			46720403	82491121	Mouse
1301966	Lifespan2_m	life span 2 (mouse)			Not determined		10	49848222	83848397	Mouse
11353843	Gluq1_m	blood glucose QTL 1 (mouse)					10	73987216	125515907	Mouse
1300597	Skull14_m	skull morphology 14 (mouse)			Not determined		10	49848187	83848412	Mouse
4142169	Pbwg16_m	postnatal body weight growth 16 (mouse)			Not determined		10	49848187	83848412	Mouse
1301502	Eae17_m	susceptibility to experimental allergic encephalomyelitis 17 (mouse)			Not determined		10	51091490	85091639	Mouse
1558757	Eae34_m	experimental allergic encephalomyelitis susceptibility 34 (mouse)			Not determined		10	21408154	114217230	Mouse
26884450	Sklq15_m	skull length QTL 15, 16 week (mouse)					10	59335822	122335905	Mouse
27095911	Pglq15_m	pelvic girdle length QTL 15, 16 week (mouse)					10	39175996	129635869	Mouse
1301737	Insq9_m	insulin QTL 9 (mouse)			Not determined		10	65490938	99491121	Mouse
1300975	Fembrs3_m	femur breaking strength 3 (mouse)			Not determined		10	75338568	109338767	Mouse
4142272	W10q5_m	weight 10 weeks QTL 5 (mouse)			Not determined			12704051	84079784	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_003949017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_003949018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC152062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_003949017

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	10	80,166,293 - 80,169,019 (-)	NCBI
GRCm38	10	80,330,459 - 80,333,185 (-)	NCBI

Sequence:

show sequence

GAGATTGGGTCTTTCTGTGTAGCCCAAGTTGGCCTTGGATTCTGGCCCCTCCGATGTCAGCCAC
TGGAGTACTGGATGACAGAGTACACAGACCACATAGTGAGTTCAATGGCAGCCTGGGCTCCAGA
GTCCAGGTTTCAAACCCCACCACCCAAAAAGGGTAGGGGAGAGAGACGACTCAGTGGCCAAACG
CTTTCTATGAAGGCCCGAGGACGTGAGTTTGGAACCCAGCACATACCAACAAAACAGAACTAAC
AAGAACAGGCTTGCTACAGTGTGTCTGAAACCCAGCACTTGGGAGAGGGTGGCAAAGACAAACA
GCTCCCTGGACCTCACTGAACAGTCAGTCAACCTGAAGCAATGAGCTACAGATTCACAGAGCAA
GTGGAGAGAAGCCAGCCAGATGGCTCAGCACTTGCCAAACACAAGGGCCATGTAACCTGATTGC
TTCCATGTGGTGGAAGATCTCTCTTTCCATCTCTGTGTCTCTCTCTCCAGCGTACCTCCCAAGC
AAACAAGGGGCCAGCTGGGCCACTGGAAAAACCAGACTTGCAGAGAAACCAGACTTGGGGCCTG
GCATGCAGCCAGGGCCCCAAGAGGAGGCAGGTCACATGGAGAGTTGCAGTAGGACCCTAGGGTG
CCCTTTTCCAAAGACCTTGGAAGAGAAGCAGGCAAATGAAAATCCCCCTTCTTGGGATTCCAGG
ATGAGACCCTACAGGGATAGGACCCGGGAGCCAAGCCTGCATTCCCAG

hide sequence

RefSeq Acc Id:

XR_003949018

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	10	80,166,293 - 80,167,628 (-)	NCBI
GRCm38	10	80,330,459 - 80,331,794 (-)	NCBI

Sequence:

show sequence

GACAGAGGCTGTGGCCTATACCTGGGCCACACAGCGGGAAAATGGGCTGTCTTACGGTGCTGAG
TCACAGGGGCCAGCTGGGCCACTGGAAAAACCAGACTTGCAGAGAAACCAGACTTGGGGCCTGG
CATGCAGCCAGGGCCCCAAGAGGAGGCAGGTCACATGGAGAGTTGCAGTAGGACCCTAGGGTGC
CCTTTTCCAAAGACCTTGGAAGAGAAGCAGGCAAATGAAAATCCCCCTTCTTGGGATTCCAGGA
TGAGACCCTACAGGGATAGGACCCGGGAGCCAAGCCTGCATTCCCAG

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
MGD	MGI:6365667	ENTREZGENE
NCBI Gene	Gm51809	ENTREZGENE
PhenoGen	Gm51809	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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