AABR07034438.1 (null) - Rat Genome Database

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Gene: AABR07034438.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07034438.1
Name:
RGD ID: 15005155
Description: Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity and ubiquitin protein ligase binding activity. Predicted to be located in nucleoplasm. Predicted to be part of VCP-NPL4-UFD1 AAA ATPase complex.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1168,398,182 - 68,460,080 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1171,634,392 - 71,695,000 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENSRNOT00000029842   ⟹   ENSRNOP00000031421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1168,398,182 - 68,437,631 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000073550   ⟹   ENSRNOP00000066087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1168,398,182 - 68,460,080 (-)Ensembl
Rnor_6.0 Ensembl1171,634,392 - 71,695,000 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091575   ⟹   ENSRNOP00000072788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1168,398,192 - 68,460,079 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000031421.6
  ENSRNOP00000066087.2
  ENSRNOP00000072788.2
Ensembl Acc Id: ENSRNOP00000066087   ⟸   ENSRNOT00000073550
Ensembl Acc Id: ENSRNOP00000031421   ⟸   ENSRNOT00000029842
Ensembl Acc Id: ENSRNOP00000072788   ⟸   ENSRNOT00000091575
Protein Domains
UBX

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R9B9-F1-model_v2 AlphaFold M0R9B9 1-490 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000046969 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029842.6 UniProtKB/TrEMBL
  ENSRNOT00000073550.3 UniProtKB/TrEMBL
  ENSRNOT00000091575.2 UniProtKB/TrEMBL
Gene3D-CATH DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
  Glutaredoxin UniProtKB/TrEMBL
InterPro Thioredoxin-like_sf UniProtKB/TrEMBL
  UAS UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
  UBA_8 UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  UBX_7/2 UniProtKB/TrEMBL
  UBX_dom UniProtKB/TrEMBL
  UBX_domain-protein UniProtKB/TrEMBL
PANTHER FAS-ASSOCIATED PROTEIN UniProtKB/TrEMBL
  UBX DOMAIN-CONTAINING PROTEIN 7 UniProtKB/TrEMBL
Pfam Thioredoxin_7 UniProtKB/TrEMBL
  UBA_8 UniProtKB/TrEMBL
  UBX UniProtKB/TrEMBL
PhenoGen AABR07034438.1 PhenoGen
PIRSF UCP037991_UBX7/2 UniProtKB/TrEMBL
PROSITE UBX UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046969 RatGTEx
SMART UAS UniProtKB/TrEMBL
  UBX UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/TrEMBL
  SSF52833 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A0G2K3V1_RAT UniProtKB/TrEMBL
  D3ZCR9_RAT UniProtKB/TrEMBL
  M0R9B9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07034438.1        Symbol and Name status set to provisional 45752 PROVISIONAL