AABR07044388.2 (null) - Rat Genome Database

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Gene: AABR07044388.2 (null) Rattus norvegicus
Analyze
Symbol: AABR07044388.2
Name:
RGD ID: 15004044
Description: Predicted to be involved in neuron projection development and regulation of cell adhesion. Predicted to be located in extracellular region and intracellular membrane-bounded organelle. Predicted to be active in collagen-containing extracellular matrix and extracellular space.
Type: processed_transcript
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl204,026,463 - 4,085,578 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl204,436,419 - 4,486,680 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENSRNOT00000048985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,026,463 - 4,036,053 (-)Ensembl
Rnor_6.0 Ensembl204,476,866 - 4,486,493 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,026,463 - 4,085,578 (-)Ensembl
Rnor_6.0 Ensembl204,436,419 - 4,453,368 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000078243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,481,539 - 4,484,112 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,026,463 - 4,085,578 (-)Ensembl
Rnor_6.0 Ensembl204,468,505 - 4,484,113 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000082951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,453,390 - 4,458,529 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,484,356 - 4,486,493 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,458,548 - 4,480,715 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088392
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,484,114 - 4,486,680 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000089221.1
  ENSRNOP00000090284.1
Protein Domains
Fibrinogen C-terminal   Fibronectin type-III

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000033581 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000048985.6 UniProtKB/TrEMBL
  ENSRNOT00000077635.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.90.215.10 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro ECM_Regulatory_Proteins UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF_extracell UniProtKB/TrEMBL
  EGF_Tenascin UniProtKB/TrEMBL
  Fibrinogen-like_C UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_1 UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_dom UniProtKB/TrEMBL
  Fibrinogen_CS UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
PANTHER PTHR46708:SF3 UniProtKB/TrEMBL
  TENASCIN UniProtKB/TrEMBL
Pfam EGF_2 UniProtKB/TrEMBL
  EGF_Tenascin UniProtKB/TrEMBL
  Fibrinogen_C UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
PhenoGen AABR07044388.2 PhenoGen
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  FIBRINOGEN_C_1 UniProtKB/TrEMBL
  FIBRINOGEN_C_2 UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000033581 RatGTEx
SMART EGF UniProtKB/TrEMBL
  FBG UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
  SSF56496 UniProtKB/TrEMBL
UniProt A0A8I6AE34_RAT UniProtKB/TrEMBL
  A0A8I6GHW9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07044388.2        Symbol and Name status set to provisional 45752 PROVISIONAL