Gm23656 (predicted gene, 23656) - Rat Genome Database

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Gene: Gm23656 (predicted gene, 23656) Mus musculus
Analyze
Symbol: Gm23656
Name: predicted gene, 23656
RGD ID: 15003008
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X104,917,430 - 104,917,541 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX104,917,430 - 104,917,541 (+)EnsemblGRCm39 Ensembl
GRCm38X105,873,824 - 105,873,935 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX105,873,824 - 105,873,935 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXDNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gm23656
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X104,917,430 - 104,917,541 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX104,917,430 - 104,917,541 (+)EnsemblGRCm39 Ensembl
GRCm38X105,873,824 - 105,873,935 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX105,873,824 - 105,873,935 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXDNCBI
RNU6-158P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38448,932,755 - 48,932,854 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl448,932,755 - 48,932,854 (-)EnsemblGRCh38hg38GRCh38
GRCh37448,934,772 - 48,934,871 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map4p11NCBI
CHM1_1448,933,914 - 48,934,013 (-)NCBICHM1_1
T2T-CHM13v2.0448,899,358 - 48,899,457 (-)NCBIT2T-CHM13v2.0

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Variants in Gm23656
3 total Variants

Predicted Target Of
Summary Value
Count of predictions:62
Count of miRNA genes:61
Interacting mature miRNAs:61
Transcripts:ENSMUST00000122626
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse

1 to 10 of 10 rows





RefSeq Transcripts XR_004940493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL670660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000122626
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX104,917,430 - 104,917,541 (+)Ensembl
GRCm38.p6 EnsemblX105,873,824 - 105,873,935 (+)Ensembl
RefSeq Acc Id: XR_004940493
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X104,917,430 - 104,917,541 (+)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000084575 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000122626 ENTREZGENE
MGD MGI:5453433 ENTREZGENE
NCBI Gene Gm23656 ENTREZGENE
PhenoGen Gm23656 PhenoGen
RNAcentral URS00006E45CC RNACentral