Gm25785 (predicted gene, 25785) - Rat Genome Database

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Gene: Gm25785 (predicted gene, 25785) Mus musculus
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Symbol: Gm25785
Name: predicted gene, 25785
RGD ID: 15002469
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391851,740,616 - 51,740,740 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1851,740,616 - 51,740,740 (-)EnsemblGRCm39 Ensembl
GRCm381851,607,544 - 51,607,668 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1851,607,544 - 51,607,668 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map18D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm25785
4 total Variants

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:73
Interacting mature miRNAs:75
Transcripts:ENSMUST00000104129
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 44 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
10412184Sstapa1_mSuseptibility to Staphylococus aureus infection 1 (mouse)Not determined184654154657590708Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse

1 to 10 of 44 rows





RefSeq Transcripts XR_004940050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC118734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000104129
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1851,740,616 - 51,740,740 (-)Ensembl
GRCm38.p6 Ensembl1851,607,544 - 51,607,668 (-)Ensembl
RefSeq Acc Id: XR_004940050
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391851,740,616 - 51,740,740 (-)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000077317 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000104129 ENTREZGENE
MGD MGI:5455562 ENTREZGENE
NCBI Gene Gm25785 ENTREZGENE
PhenoGen Gm25785 PhenoGen
RNAcentral URS00006B3D9A RNACentral