Gm25160 (predicted gene, 25160) - Rat Genome Database

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Gene: Gm25160 (predicted gene, 25160) Mus musculus
Analyze
Symbol: Gm25160
Name: predicted gene, 25160
RGD ID: 15002226
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39897,949,166 - 97,949,267 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl897,949,166 - 97,949,267 (+)EnsemblGRCm39 Ensembl
GRCm38897,222,534 - 97,222,635 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl897,222,534 - 97,222,635 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map8D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gm25160
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39897,949,166 - 97,949,267 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl897,949,166 - 97,949,267 (+)EnsemblGRCm39 Ensembl
GRCm38897,222,534 - 97,222,635 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl897,222,534 - 97,222,635 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map8D1NCBI
RNU6-652P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38455,885,595 - 55,885,701 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl455,885,595 - 55,885,701 (+)EnsemblGRCh38hg38GRCh38
GRCh37456,751,761 - 56,751,867 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map4q12NCBI
CHM1_1456,786,935 - 56,787,041 (+)NCBICHM1_1
T2T-CHM13v2.0459,373,740 - 59,373,846 (+)NCBIT2T-CHM13v2.0
LOC120095351
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81091,249,647 - 91,249,753 (-)NCBIGRCr8
mRatBN7.21090,749,818 - 90,749,924 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1090,749,818 - 90,749,924 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1094,006,581 - 94,006,687 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map10q32.1NCBI
LOC119874114
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1138,230,756 - 38,230,862 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01140,507,597 - 40,507,703 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1140,507,597 - 40,507,703 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11139,200,208 - 39,200,314 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01138,989,912 - 38,990,018 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01139,630,805 - 39,630,911 (+)NCBIUU_Cfam_GSD_1.0

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Variants in Gm25160
10 total Variants

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:71
Interacting mature miRNAs:73
Transcripts:ENSMUST00000158914
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 32 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
14696809Rbcn3_mrod bipolar cell number 3 (mouse)895056628102856632Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
14700778Iopq1_mintraocular pressure QTL 1 (mouse)896926628103726632Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined886443553120443701Mouse

1 to 10 of 32 rows





RefSeq Transcripts XR_004935209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC164603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000158914
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl897,949,166 - 97,949,267 (+)Ensembl
GRCm38.p6 Ensembl897,222,534 - 97,222,635 (+)Ensembl
RefSeq Acc Id: XR_004935209
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39897,949,166 - 97,949,267 (+)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000089539 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000158914 ENTREZGENE
MGD MGI:5454937 ENTREZGENE
NCBI Gene Gm25160 ENTREZGENE
PhenoGen Gm25160 PhenoGen
RNAcentral URS0000710967 RNACentral