Gm25204 (predicted gene, 25204) - Rat Genome Database

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Gene: Gm25204 (predicted gene, 25204) Mus musculus
Analyze
Symbol: Gm25204
Name: predicted gene, 25204
RGD ID: 15000931
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391436,489,382 - 36,489,487 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1436,489,382 - 36,489,487 (+)EnsemblGRCm39 Ensembl
GRCm381436,767,425 - 36,767,530 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1436,767,425 - 36,767,530 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14BNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm25204
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391436,489,382 - 36,489,487 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1436,489,382 - 36,489,487 (+)EnsemblGRCm39 Ensembl
GRCm381436,767,425 - 36,767,530 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1436,767,425 - 36,767,530 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14BNCBI
RNU6-839P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810109,239,639 - 109,239,746 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10109,239,639 - 109,239,746 (+)EnsemblGRCh38hg38GRCh38
GRCh3710110,999,397 - 110,999,504 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map10q25.1NCBI
CHM1_110111,281,142 - 111,281,249 (+)NCBICHM1_1
T2T-CHM13v2.010110,129,539 - 110,129,646 (+)NCBIT2T-CHM13v2.0
LOC120094860
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8995,373,381 - 95,373,484 (+)NCBIGRCr8
mRatBN7.2987,925,492 - 87,925,595 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl987,925,492 - 87,925,595 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl994,349,080 - 94,349,183 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map9q35NCBI

Variants

.
Variants in Gm25204
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:140
Count of miRNA genes:123
Interacting mature miRNAs:127
Transcripts:ENSMUST00000082843
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
27226727Tibl21_mtibia length 21, 16 week (mouse)143412195752937457Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004938765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082843
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1436,489,382 - 36,489,487 (+)Ensembl
GRCm38.p6 Ensembl1436,767,425 - 36,767,530 (+)Ensembl
RefSeq Acc Id: XR_004938765
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391436,489,382 - 36,489,487 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064777 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082843 ENTREZGENE
MGD MGI:5454981 ENTREZGENE
NCBI Gene Gm25204 ENTREZGENE
PhenoGen Gm25204 PhenoGen