Gm24042 (predicted gene, 24042) - Rat Genome Database

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Gene: Gm24042 (predicted gene, 24042) Mus musculus
Analyze
Symbol: Gm24042
Name: predicted gene, 24042
RGD ID: 15000770
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39425,819,671 - 25,819,775 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl425,819,671 - 25,819,773 (-)EnsemblGRCm39 Ensembl
GRCm38425,819,671 - 25,819,775 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl425,819,671 - 25,819,773 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map4A3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm24042
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39425,819,671 - 25,819,775 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl425,819,671 - 25,819,773 (-)EnsemblGRCm39 Ensembl
GRCm38425,819,671 - 25,819,775 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl425,819,671 - 25,819,773 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map4A3NCBI
RNU6-812P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38278,882,628 - 78,882,734 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl278,882,628 - 78,882,734 (+)EnsemblGRCh38hg38GRCh38
GRCh37279,109,754 - 79,109,860 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2p12NCBI
CHM1_1279,034,149 - 79,034,255 (+)NCBICHM1_1
T2T-CHM13v2.0278,882,924 - 78,883,030 (+)NCBIT2T-CHM13v2.0
LOC119874123
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1118,537,950 - 18,538,054 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01120,519,102 - 20,519,206 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1120,519,102 - 20,519,206 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11119,247,248 - 19,247,352 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01119,094,122 - 19,094,226 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01119,693,049 - 19,693,153 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm24042
11 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:33
Interacting mature miRNAs:33
Transcripts:ENSMUST00000083114
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1558992Ses8_msalmonella enteritidis susceptibility 8 (mouse)Not determined4868324042683429Mouse
4141302Ssrq5_mstress response QTL 5 (mouse)Not determined868324042683430Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
12880405Jcdq1_mjoint cartilage degeneration QTL 1 (mouse)41256237746562509Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse
1301510Bbaa13_mB.burgdorferi-associated arthritis 13 (mouse)Not determined4126395649Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
25440481Moaq1_mmodifier of alien QTL 1 (mouse)41950000046000000Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse
1302010Wta1_mweight adult 1 (mouse)Not determined4868324042683429Mouse
1301437Scon1_msucrose consumption 1 (mouse)Not determined42237344856373612Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse
1301473Triglq1_mtriglyceride QTL 1 (mouse)Not determined4868324042683429Mouse
1300769Pcyts2_mplasmacytoma susceptibility 2 (mouse)Not determined42211194456112145Mouse
1302058Hrtfm3_mheart failure modifier 3 (mouse)Not determined42211194456112145Mouse
1302184Aaom1_mautoimmune aoritis in MRL mice 1 (mouse)Not determined42432229946332776Mouse
1302125Lxw1_mlupus BXSB x NZW 1 (mouse)Not determined4868324042683429Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004942288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL954321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000083114
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl425,819,671 - 25,819,773 (-)Ensembl
GRCm38.p6 Ensembl425,819,671 - 25,819,773 (-)Ensembl
RefSeq Acc Id: XR_004942288
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39425,819,671 - 25,819,775 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065048 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083114 ENTREZGENE
MGD MGI:5453819 ENTREZGENE
NCBI Gene Gm24042 ENTREZGENE
PhenoGen Gm24042 PhenoGen