Gm24968 (predicted gene, 24968) - Rat Genome Database

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Gene: Gm24968 (predicted gene, 24968) Mus musculus
Analyze
Symbol: Gm24968
Name: predicted gene, 24968
RGD ID: 15000722
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391670,971,710 - 70,971,816 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1670,971,710 - 70,971,816 (-)EnsemblGRCm39 Ensembl
GRCm381671,174,822 - 71,174,928 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1671,174,822 - 71,174,928 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map16C3.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm24968
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391670,971,710 - 70,971,816 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1670,971,710 - 70,971,816 (-)EnsemblGRCm39 Ensembl
GRCm381671,174,822 - 71,174,928 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1671,174,822 - 71,174,928 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map16C3.1NCBI
RNU6-343P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381256,588,518 - 56,588,621 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1256,588,518 - 56,588,621 (+)EnsemblGRCh38hg38GRCh38
GRCh371256,982,302 - 56,982,405 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12q13.3NCBI
CHM1_11256,949,836 - 56,949,939 (+)NCBICHM1_1
T2T-CHM13v2.01256,556,513 - 56,556,616 (+)NCBIT2T-CHM13v2.0
LOC120095808
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81152,954,069 - 52,954,175 (+)NCBIGRCr8
mRatBN7.21139,484,772 - 39,484,878 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1139,484,772 - 39,484,878 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map11q12NCBI
LOC119867134
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3128,846,497 - 28,846,597 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03129,047,564 - 29,047,664 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3129,047,564 - 29,047,664 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13128,914,003 - 28,914,103 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03128,928,766 - 28,928,866 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03129,427,871 - 29,427,971 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm24968
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:57
Interacting mature miRNAs:57
Transcripts:ENSMUST00000179817
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301138Pcd4ts3_mp-glycoprotein positive CD4 T cell subset 3 (mouse)Not determined164059392374594076Mouse
1301394Eae11_msusceptibility to experimental allergic encephalomyelitis 11 (mouse)Not determined165356189187562035Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
1558740Bpq9_mblood pressure QTL 9 (mouse)Not determined166332733697327472Mouse
1301719Remslp3_mrapid eye movement sleep 3 (mouse)Not determined164438335078383506Mouse
1357778Diobq_mdiet-induced obesity QTL (mouse)Not determined164219781782331174Mouse
4141113Tgq28_mtriglyceride QTL 28 (mouse)Not determined6298664696986646Mouse
4142262Lmr18_mleishmaniasis resistance 18 (mouse)Not determined166912761198008968Mouse
11049573Lmr18b_mleishmaniasis resistance 18b (mouse)166912761198008968Mouse
1301598Renf2_mrenal failure 2 (mouse)Not determined167038025298008968Mouse
11049574Lmr18a_mleishmaniasis resistance 18a (mouse)166912761198008968Mouse
1300928Etia_methanol induced activation (mouse)Not determined166331390797314016Mouse
11522747Eae41_mexperimental allergic encephalomyelitis susceptibility 41 (mouse)164039913478015472Mouse
14928310Manh80_mmandible shape 80 (mouse)164821984182219841Mouse
1301125Sluc27_msusceptibility to lung cancer 27 (mouse)Not determined166160864495608764Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163732036284696888Mouse
4142112Skts-fp3_mskin tumor susceptibility in FVB and PWK 3 (mouse)Not determined164005388172924385Mouse
1302194Pgia10_mproteoglycan induced arthritis 10 (mouse)Not determined166860072298008968Mouse
4141212Imraq3_mimmune response to AAV2 QTL 3 (mouse)Not determined164438335078383506Mouse
1558836Dice1b_mdetermination of interleukin 4 commitment 1b (mouse)Not determined164551100072274485Mouse
1301364Lith14_mlithogenic gene 14 (mouse)Not determined165566184689661961Mouse
11522753Cocia19_mcocaine-induced activity, QTL 19 (mouse)166925448298008968Mouse
1301032Tauph_mtau phosphorylation (mouse)Not determined166907613298008968Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004939423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000179817
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1671,174,822 - 71,174,928 (-)Ensembl
Ensembl Acc Id: ENSMUST00000240135
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1670,971,710 - 70,971,816 (-)Ensembl
RefSeq Acc Id: XR_004939423
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391670,971,710 - 70,971,816 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000096043 Ensembl
  ENSMUSG00000119019 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000240135 ENTREZGENE
MGD MGI:5454745 ENTREZGENE
NCBI Gene Gm24968 ENTREZGENE
PhenoGen Gm24968 PhenoGen
RNAcentral URS00006B2834 RNACentral