Gm25056 (predicted gene, 25056) - Rat Genome Database

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Gene: Gm25056 (predicted gene, 25056) Mus musculus
Analyze
Symbol: Gm25056
Name: predicted gene, 25056
RGD ID: 15000428
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393151,631,985 - 151,632,046 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3151,631,985 - 151,632,046 (-)EnsemblGRCm39 Ensembl
GRCm383151,926,348 - 151,926,409 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3151,926,348 - 151,926,409 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map3H3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm25056
3 total Variants

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:93
Interacting mature miRNAs:98
Transcripts:ENSMUST00000157372
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1558868Ses9_msalmonella enteritidis susceptibility 9 (mouse)Not determined3119057332153057456Mouse
1301563Alcp3_malcohol preference locus 3 (mouse)Not determined3130736935159745316Mouse
11039523Tbbr1_mTrypanosoma brucei brucei response 1 (mouse)3130849375159745316Mouse
1301528Loco1_mlocomotor activity 1 (mouse)Not determined3133461893159745316Mouse
4142449Tgq14_mtriglyceride QTL 14 (mouse)Not determined119318586153318586Mouse
10412240Alpq6_malcohol preference QTL 6 (mouse)Not determined3120772078154772078Mouse
4141935Tgq15_mtriglyceride QTL 15 (mouse)Not determined119318586153318586Mouse
1301347Fpli_mfasting plasma insulin (mouse)Not determined3126460514159745316Mouse
1301218Letohc1_mlow ethanol consumption 1 (mouse)Not determined3126352986159745316Mouse
1302151Lprm2_mlymphoproliferation modifier 2 (mouse)Not determined3119778857153779044Mouse

1 to 10 of 14 rows





RefSeq Transcripts XR_004941684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000157372
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3151,631,985 - 151,632,046 (-)Ensembl
GRCm38.p6 Ensembl3151,926,348 - 151,926,409 (-)Ensembl
RefSeq Acc Id: XR_004941684
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393151,631,985 - 151,632,046 (-)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000087997 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000157372 ENTREZGENE
MGD MGI:5454833 ENTREZGENE
NCBI Gene Gm25056 ENTREZGENE
PhenoGen Gm25056 PhenoGen
RNAcentral URS000064A815 RNACentral