Gm42875 (predicted gene 42875) - Rat Genome Database

Name: Gm42875
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gm42875 (predicted gene 42875) Mus musculus

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Symbol:

Gm42875

Name:

predicted gene 42875

RGD ID:

15000344

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	128,847,097 - 128,854,902 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	128,846,543 - 128,854,903 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	128,770,188 - 128,777,838 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	128,769,524 - 128,777,837 (+)	Ensembl	GRCm38		mm10	GRCm38
Cytogenetic Map	5	G1.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073

Genomics

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
27226719	Tibw6_m	tibia width 6, proximal, 16 week (mouse)					5	72857343	139985755	Mouse
1301715	Elmaz2_m	elevated maze behavior 2 (mouse)			Not determined		5	125178229	141700466	Mouse
10412191	Bbaa24_m	B.burgdorferi-associated arthritis 24 (mouse)			Not determined		5	119945037	141700466	Mouse
13464142	Bbaa2a_m	B.burgdorferi-associated arthritis 2a (mouse)					5	128571199	130052971	Mouse
1301974	Chab7_m	cholesterol absorption 7 (mouse)			Not determined		5	95233214	129233330	Mouse
11528552	Scram1_m	spinal cord resistance to astrocytoma modifier 1 (mouse)					5	121455402	151758149	Mouse
1300827	Cora1_m	correlation in cytokine production 1 (mouse)			Not determined		5	115156883	149157015	Mouse
25314315	Mlh1fc4_m	MLH1 foci count 4 (mouse)					5	74460661	132528839	Mouse
1357662	Lprq4_m	lipoprotein QTL 4 (mouse)			Not determined		5	114021753	129632606	Mouse
14746986	Manh58_m	mandible shape 58 (mouse)					5	102446283	136446283	Mouse
10412239	Alpq7_m	alcohol preference QTL 7 (mouse)			Not determined		5	104705939	138705939	Mouse
1357644	Egrd1_m	early growth rate, direct effect 1 (mouse)			Not determined		5	95434580	129434786	Mouse
12859290	Criq2_m	Citrobacter rodentium infection QTL 2 (mouse)					5	101332579	135332579	Mouse
1300940	Actd3_m	activity-distance traveled 3 (mouse)			Not determined		5	96320385	130320533	Mouse
1300659	Pcd8ts1_m	p-glycoprotein positive CD8 T cell subset 1 (mouse)			Not determined		5	97021753	131021986	Mouse
1301363	Pbwg13_m	postnatal body weight growth 13 (mouse)			Not determined		5	125133457	151758149	Mouse
1301362	Prnr1_m	prion resistance 1 (mouse)			Not determined		5	89418876	146787935	Mouse
1558774	Lith17_m	lithogenic gene 17 (mouse)			Not determined		5	95465549	129465722	Mouse
1300913	Bwefm_m	body weight females and males day 10 (mouse)			Not determined		5	109439348	143439459	Mouse
4141081	Nidd7k_m	Nidd7 on KK-A (mouse)			Not determined			119945037	149347326	Mouse
10402486	Dipa1_m	drug induced psychomotor activation 1 (mouse)			Not determined		5	95465549	129465722	Mouse
1301624	Aevm2_m	autoimmune extremity vasculitis in MRL mice 2 (mouse)			Not determined		5	101863832	135864028	Mouse
10043890	Trigq4_m	triglyceride QTL 4 (mouse)			Not determined		5	107906299	141906412	Mouse
1302079	Lbw3_m	lupus NZB x NZW 3 (mouse)			Not determined		5	124700335	151758149	Mouse
11532736	Sluc33b_m	susceptibility to lung cancer 33b (mouse)					5	102945037	136945196	Mouse
26884395	Humsd2_m	humerus midshaft diameter 2, 10 week (mouse)					5	70057343	132528839	Mouse
1301858	Smdq1_m	segregation of mitochondrial DNA QTL 1 (mouse)			Not determined		5	97021753	131021986	Mouse
1301986	Bpq4_m	blood pressure QTL 4 (mouse)			Not determined		5	121555236	151758149	Mouse
1301857	Bglq14_m	body growth late QTL 14 (mouse)			Not determined		5	118948964	151758149	Mouse
10412202	Bbaa26_m	B.burgdorferi-associated arthritis 26 (mouse)			Not determined		5	104583688	138555455	Mouse
1301543	Hypch_m	hypercholesterolemia (mouse)			Not determined		5	109238624	139118905	Mouse
12904945	Tammq2_m	tibialis anterior muscle mass QTL 2 (mouse)					5	100665965	134665965	Mouse
4142473	Chlq11_m	circulating hormone level QTL 11 (mouse)			Not determined		5	107906299	141906412	Mouse
13464251	Ahl21_m	age related hearing loss, early onset 21 (mouse)					5	109167240	143167381	Mouse
11341716	Rvfs3_m	Rift Valley fever susceptibility 3 (mouse)					5	26441234	138455402	Mouse
13464244	Ahl19_m	age related hearing loss, early onset 19 (mouse)					5	95465549	129465722	Mouse
1301226	Bbaa2_m	B.burgdorferi-associated arthritis 2 (mouse)			Not determined		5	115156883	149157015	Mouse
12904959	Smmq1_m	soleus muscle mass QTL 1 (mouse)					5	100665965	134665965	Mouse
10412197	Bbaa25_m	B.burgdorferi-associated arthritis 25 (mouse)			Not determined		5	109167240	143167381	Mouse
1301102	Cia14_m	collagen induced arthritis 14 (mouse)			Not determined		5	113320385	138555455	Mouse
13506928	Recrq8_m	recombination rate in male meiosis QTL 8 (mouse)					5	74460661	132528839	Mouse
13464243	Ahl20_m	age related hearing loss, early onset 20 (mouse)					5	107906299	141906412	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_003955998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK079143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000197674

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	128,846,588 - 128,854,901 (+)	Ensembl
GRCm38.p6 Ensembl	5	128,769,524 - 128,777,837 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000304359

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	128,846,543 - 128,854,903 (+)	Ensembl

RefSeq Acc Id:

XR_003955998

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	128,847,097 - 128,854,902 (+)	NCBI
GRCm38	5	128,770,188 - 128,777,838 (+)	NCBI

Sequence:

show sequence

GAGACAGTAAGCAGACAAATACTTTAGAATGTGACATAGTCATATCCCAAGTTCATGTGTTAAT
TTGAGAGAGAAAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAT
GAGAATACACCAGGGATTGGAACCCCCCAAAATGAACAGCATTTTTTTTTGATGTTTCAAAAAC
TTACATAATAAAATCCATCTTCATCGATTTCACCAAAAACAGTAATAATGTCTCCTGTGCAAAA
TGGAAGTTCAGCCTGCAAAGACAGAAGACAGAGCCAAGAGCAGATTGCAACAGAAGACCGAGCT
AAGAGCAGATTGCAACAAGGATGATGTGTGGACTCCAGGGTGGAACCCCAGGGCAGCTGTGAGG
CCCCACTTTGGATTTAGCTGGGGTTTGCAAGAAGAACTTAGTCCCCTGTCACGGGACCTGGTTA
ATGAAGTTTCAGCTATACAAACGTCCCAGGGATTGCATCTTCTGGATGCGGCTTTGATGAGCAT
TTGCCGTCTGTGAGTTCTCTGTGCTTCTTCGGGTTGTATTATGTGGCTTCTCTGTAGACTGCAA
GACCTCTGTGGTCAGGAGTGGAGTATGAAGCTGAGGATGGAGGCCTAGGGTCAGCTTCCCCTGG
GAAATGCCAGCTAAGTCTTCCAGGGCGCAAAGGGATGCCCTGGCTCAGGAACAGCTTATGCACC
TGTTTCTTGGGAAGCCCAGTTGTGTCACGTGATGTTTTTCTGGACGCTGTCTCGTGAGAGGATG
TTTTGCTGAAGTGGACACATGAAAGAGCATGTGATGTTTTGCCGAAGCAGACACTTGGGAGGGT
GTGTGCTACGGAAGTGCAATGCCTCGCTGGACTTCGCTGGTCTTCATTTCGTAGACGGAAACGC
ACCAAAAATCTTCTTAGAGTATTCCAGCTGATTCTGACCGTTTCTGCTGACCTGTGCTGATTGA
CTGGAACCTTGAAGTTTCTGCTGGATCATGCTGATGCTACTGATGCACATTCGATGTTTGCTAT
TGAATTGGACTGCTGGTATCTTGACAACGAAGGGTGAAATCGCCCCCATCGAACTACTAAACAG
GTCTACAGCTCCCTTTTCCTATCAACCTTGTCCTTTCCCAAGTGACAAGTAGCTCTGGTCCCTG
CGTTAGTAGGGAGCTTGGAGCACTTCAGAACCCAAAATAAAGTAGATTTTGAAAATG

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Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000105271	Ensembl
MGD	MGI:5663012	ENTREZGENE
NCBI Gene	Gm42875	ENTREZGENE
PhenoGen	Gm42875	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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