Gm26379 (predicted gene, 26379) - Rat Genome Database

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Gene: Gm26379 (predicted gene, 26379) Mus musculus
Analyze
No known orthologs.
Symbol: Gm26379
Name: predicted gene, 26379
RGD ID: 14999879
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39474,553,456 - 74,553,587 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl474,553,451 - 74,553,588 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl474,553,456 - 74,553,587 (+)EnsemblGRCm39 Ensembl
GRCm38474,635,219 - 74,635,350 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl474,635,214 - 74,635,351 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl474,635,219 - 74,635,350 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map4C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm26379
8 total Variants

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:116
Interacting mature miRNAs:119
Transcripts:ENSMUST00000178125
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 62 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46571808699718086Mouse
25314308Mlh1fc1_mMLH1 foci count 1 (mouse)44850000076918237Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474444699108444983Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined471982069105982216Mouse

1 to 10 of 62 rows





RefSeq Transcripts XR_004942349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BX936366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000178125
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl474,635,214 - 74,635,351 (+)Ensembl
Ensembl Acc Id: ENSMUST00000200225
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl474,553,456 - 74,553,587 (+)Ensembl
GRCm38.p6 Ensembl474,635,219 - 74,635,350 (+)Ensembl
Ensembl Acc Id: ENSMUST00020181707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl474,553,451 - 74,553,588 (+)Ensembl
RefSeq Acc Id: XR_004942349
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39474,553,456 - 74,553,587 (+)NCBI
Sequence:


1 to 9 of 9 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000099334 Ensembl
  ENSMUSG00000104700 Ensembl, ENTREZGENE
  ENSMUSG00002075833 Ensembl
Ensembl Transcript ENSMUST00000200225 ENTREZGENE
MGD MGI:5456156 ENTREZGENE
NCBI Gene Gm26379 ENTREZGENE
PhenoGen Gm26379 PhenoGen
RNAcentral URS0000671B10 RNACentral
  URS0000A8D9E0 RNACentral
1 to 9 of 9 rows