Gm24680 (predicted gene, 24680) - Rat Genome Database

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Gene: Gm24680 (predicted gene, 24680) Mus musculus
Analyze
Symbol: Gm24680
Name: predicted gene, 24680
RGD ID: 14998974
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391495,167,137 - 95,167,262 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1495,167,137 - 95,167,262 (+)EnsemblGRCm39 Ensembl
GRCm381494,929,701 - 94,929,826 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1494,929,701 - 94,929,826 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14E2.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm24680
4 total Variants

Predicted Target Of
Summary Value
Count of predictions:253
Count of miRNA genes:226
Interacting mature miRNAs:245
Transcripts:ENSMUST00000158759
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 12 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1558823Tbbmd6_mtotal body bone mineral density 6 (mouse)Not determined1477073696111073787Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse
4142508Tgq25_mtriglyceride QTL 25 (mouse)Not determined85134068119134068Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
14928314Manh77_mmandible shape 77 (mouse)1476767790110767790Mouse

1 to 10 of 12 rows





RefSeq Transcripts XR_004938745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000158759
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1495,167,137 - 95,167,262 (+)Ensembl
GRCm38.p6 Ensembl1494,929,701 - 94,929,826 (+)Ensembl
RefSeq Acc Id: XR_004938745
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391495,167,137 - 95,167,262 (+)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000089384 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000158759 ENTREZGENE
MGD MGI:5454457 ENTREZGENE
NCBI Gene Gm24680 ENTREZGENE
PhenoGen Gm24680 PhenoGen
RNAcentral URS00006FF05C RNACentral