Gm25501 (predicted gene, 25501) - Rat Genome Database

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Gene: Gm25501 (predicted gene, 25501) Mus musculus
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Symbol: Gm25501
Name: predicted gene, 25501
RGD ID: 14997742
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393126,799,018 - 126,799,149 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3126,799,018 - 126,799,149 (+)EnsemblGRCm39 Ensembl
GRCm383127,005,369 - 127,005,500 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3127,005,369 - 127,005,500 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map3G2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm25501
9 total Variants

Predicted Target Of
Summary Value
Count of predictions:172
Count of miRNA genes:158
Interacting mature miRNAs:170
Transcripts:ENSMUST00000104429
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 34 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
1558868Ses9_msalmonella enteritidis susceptibility 9 (mouse)Not determined3119057332153057456Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
12910796Pwbwq6_mpost-weaning body weight QTL 6 (mouse)3110084357135715812Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
12910793Pwbwq7_mpost-weaning body weight QTL 7 (mouse)3110084357135715812Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142449Tgq14_mtriglyceride QTL 14 (mouse)Not determined119318586153318586Mouse
10412240Alpq6_malcohol preference QTL 6 (mouse)Not determined3120772078154772078Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse

1 to 10 of 34 rows





RefSeq Transcripts XR_004941721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000104429
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3126,799,018 - 126,799,149 (+)Ensembl
GRCm38.p6 Ensembl3127,005,369 - 127,005,500 (+)Ensembl
RefSeq Acc Id: XR_004941721
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393126,799,018 - 126,799,149 (+)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000077617 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000104429 ENTREZGENE
MGD MGI:5455278 ENTREZGENE
NCBI Gene Gm25501 ENTREZGENE
PhenoGen Gm25501 PhenoGen
RNAcentral URS0000622F6C RNACentral