Gm26046 (predicted gene, 26046) - Rat Genome Database

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Gene: Gm26046 (predicted gene, 26046) Mus musculus
Analyze
Symbol: Gm26046
Name: predicted gene, 26046
RGD ID: 14997701
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391929,963,499 - 29,963,664 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1929,963,499 - 29,963,664 (+)EnsemblGRCm39 Ensembl
GRCm381929,986,099 - 29,986,264 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1929,986,099 - 29,986,264 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map19C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm26046
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391929,963,499 - 29,963,664 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1929,963,499 - 29,963,664 (+)EnsemblGRCm39 Ensembl
GRCm381929,986,099 - 29,986,264 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1929,986,099 - 29,986,264 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map19C1NCBI
RNU1-65P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381084,003,332 - 84,003,479 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1084,003,332 - 84,003,479 (+)EnsemblGRCh38hg38GRCh38
GRCh371085,763,088 - 85,763,235 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map10q23.1NCBI
CHM1_11086,044,592 - 86,044,739 (+)NCBICHM1_1
T2T-CHM13v2.01084,881,463 - 84,881,610 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in Gm26046
8 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:85
Count of miRNA genes:84
Interacting mature miRNAs:85
Transcripts:ENSMUST00000157312
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192023431454234461Mouse
1357596Tgct3_mtesticular germ cell tumor 3 (mouse)Not determined192198409132912719Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192231332653911504Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
1357568Tgct4_mtesticular germ cell tumor 4 (mouse)Not determined192777198535295381Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
1302004Lfp2_mlong free running period 2 (mouse)Not determined191829516252295381Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse
4142343Moen2_mmodifier of engrailed QTL 2 (mouse)Not determined192023431454234461Mouse
1302123Tlsr8_mthymic lymphoma suppressor region 8 (mouse)Not determined192513600242388916Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1302063Eae19_mexperimental allergic encephalomyelitis 19 (mouse)Not determined191829516252295381Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004940274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC111048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000157312
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1929,963,499 - 29,963,664 (+)Ensembl
GRCm38.p6 Ensembl1929,986,099 - 29,986,264 (+)Ensembl
RefSeq Acc Id: XR_004940274
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391929,963,499 - 29,963,664 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000087937 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000157312 ENTREZGENE
MGD MGI:5455823 ENTREZGENE
NCBI Gene Gm26046 ENTREZGENE
PhenoGen Gm26046 PhenoGen