Gm22027 (predicted gene, 22027) - Rat Genome Database

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Gene: Gm22027 (predicted gene, 22027) Mus musculus
Analyze
Symbol: Gm22027
Name: predicted gene, 22027
RGD ID: 14996636
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,083,677 - 96,083,803 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,083,677 - 96,083,803 (+)EnsemblGRCm39 Ensembl
GRCm38396,176,361 - 96,176,487 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,176,361 - 96,176,487 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map3F2.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gm22027
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,083,677 - 96,083,803 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,083,677 - 96,083,803 (+)EnsemblGRCm39 Ensembl
GRCm38396,176,361 - 96,176,487 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,176,361 - 96,176,487 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map3F2.1NCBI
LOC124900296
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810119,060,983 - 119,061,111 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10119,060,983 - 119,061,111 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map10q26.11NCBI
T2T-CHM13v2.010119,956,423 - 119,956,551 (-)NCBIT2T-CHM13v2.0
LOC119866652
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2829,452,804 - 29,452,933 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02829,841,466 - 29,841,595 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12829,395,378 - 29,395,507 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02829,415,276 - 29,415,405 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02829,609,523 - 29,609,652 (-)NCBIUU_Cfam_GSD_1.0

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Variants in Gm22027
2 total Variants

Predicted Target Of
Summary Value
Count of predictions:87
Count of miRNA genes:83
Interacting mature miRNAs:85
Transcripts:ENSMUST00000122737
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 41 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse

1 to 10 of 41 rows





RefSeq Transcripts XR_004941701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000122737
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,083,677 - 96,083,803 (+)Ensembl
GRCm38.p6 Ensembl396,176,361 - 96,176,487 (+)Ensembl
RefSeq Acc Id: XR_004941701
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,083,677 - 96,083,803 (+)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000084686 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000122737 ENTREZGENE
MGD MGI:5451804 ENTREZGENE
NCBI Gene Gm22027 ENTREZGENE
PhenoGen Gm22027 PhenoGen
RNAcentral URS0000687D92 RNACentral