LINC02753 (long intergenic non-protein coding RNA 2753) - Rat Genome Database

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Advanced Search (OLGA)
Gene: LINC02753 (long intergenic non-protein coding RNA 2753) Homo sapiens
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Symbol: LINC02753
Name: long intergenic non-protein coding RNA 2753
RGD ID: 14694878
HGNC Page HGNC:54273
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381170,056,230 - 70,065,371 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1170,056,230 - 70,065,371 (-)EnsemblGRCh38hg38GRCh38
GRCh371169,902,336 - 69,911,477 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11q13.3NCBI
HuRef1166,162,298 - 66,171,439 (-)NCBIHuRef
CHM1_11169,785,370 - 69,794,491 (-)NCBICHM1_1
T2T-CHM13v2.01170,073,258 - 70,082,400 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12477932   PMID:31720086   PMID:35711569  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 11q13.2-13.4(chr11:68031693-71593495)x1 copy number loss See cases [RCV000142138] Chr11:68031693..71593495 [GRCh38]
Chr11:67799160..71304541 [GRCh37]
Chr11:67555736..70982189 [NCBI36]
Chr11:11q13.2-13.4		 likely pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:145
Count of miRNA genes:72
Interacting mature miRNAs:72
Transcripts:ENST00000511013, ENST00000528316
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357380BW64_HBody weight QTL 64 (human)2.2Body weightpercent fat after exercise training116097893786978937Human
407020099GWAS669075_Hbody height QTL GWAS669075 (human)4e-09body height (VT:0001253)body height (CMO:0000106)117006478470064785Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
159 710 338 662 446 417 620 1 224 96 192 261 1356 1162 3 322 99 591 369 33

Sequence


Ensembl Acc Id: ENST00000511013
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1170,056,230 - 70,065,371 (-)Ensembl
Ensembl Acc Id: ENST00000528316
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1170,056,230 - 70,063,924 (-)Ensembl
RefSeq Acc Id: NR_120529
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381170,056,230 - 70,065,371 (-)NCBI
T2T-CHM13v2.01170,073,258 - 70,082,400 (-)NCBI
Sequence:
RefSeq Acc Id: NR_120530
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381170,056,230 - 70,063,924 (-)NCBI
T2T-CHM13v2.01170,073,258 - 70,080,953 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC LINC02753 COSMIC
Ensembl Genes ENSG00000248844 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000511013 ENTREZGENE
  ENST00000528316 ENTREZGENE
GTEx ENSG00000248844 GTEx
HGNC ID HGNC:54273 ENTREZGENE
Human Proteome Map LINC02753 Human Proteome Map
NCBI Gene LINC02753 ENTREZGENE
RNAcentral URS0000559024 RNACentral
  URS000075C6A9 RNACentral