NOP14 (NOP14 nucleolar protein) - Rat Genome Database

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Gene: NOP14 (NOP14 nucleolar protein) Sus scrofa
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Symbol: NOP14
Name: NOP14 nucleolar protein
RGD ID: 14297809
Description: ENCODES a protein that exhibits enzyme binding (inferred); INVOLVED IN ribosome biogenesis (inferred); rRNA processing (inferred); ASSOCIATED WITH cherubism (ortholog); Ellis-Van Creveld syndrome (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN nucleolus (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nucleolar protein 14
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl81,716,826 - 1,737,902 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.181,717,019 - 1,737,971 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.281,354,507 - 1,369,861 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NOP14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl81,716,826 - 1,737,902 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.181,717,019 - 1,737,971 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.281,354,507 - 1,369,861 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NOP14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3842,937,936 - 2,963,406 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl42,937,933 - 2,963,406 (-)EnsemblGRCh38hg38GRCh38
GRCh3742,939,663 - 2,965,133 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3642,909,461 - 2,934,916 (-)NCBINCBI36Build 36hg18NCBI36
Build 3442,976,670 - 3,002,123NCBI
Celera42,850,855 - 2,876,019 (-)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef42,878,066 - 2,903,448 (-)NCBIHuRef
CHM1_142,937,605 - 2,963,147 (-)NCBICHM1_1
T2T-CHM13v2.042,936,399 - 2,962,082 (-)NCBIT2T-CHM13v2.0
Nop14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39534,795,880 - 34,817,566 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl534,795,880 - 34,817,492 (-)EnsemblGRCm39 Ensembl
GRCm38534,638,536 - 34,660,148 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl534,638,536 - 34,660,148 (-)EnsemblGRCm38mm10GRCm38
MGSCv37534,981,185 - 35,002,797 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36534,955,393 - 34,976,926 (-)NCBIMGSCv36mm8
Celera532,109,471 - 32,133,757 (-)NCBICelera
Cytogenetic Map5B2NCBI
cM Map517.91NCBI
Nop14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81480,305,912 - 80,327,053 (+)NCBIGRCr8
mRatBN7.21476,081,313 - 76,102,454 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1476,080,793 - 76,102,453 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1480,534,091 - 80,555,227 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01481,774,744 - 81,795,880 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01478,219,972 - 78,241,108 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01481,340,141 - 81,361,277 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1481,340,041 - 81,362,441 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01482,027,597 - 82,048,733 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41481,723,110 - 81,744,240 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11481,725,592 - 81,746,632 (+)NCBI
Celera1475,005,849 - 75,026,979 (+)NCBICelera
Cytogenetic Map14q21NCBI
Nop14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555141,817,980 - 1,836,984 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555141,817,645 - 1,837,011 (-)NCBIChiLan1.0ChiLan1.0
NOP14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v233,273,557 - 3,299,036 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan143,209,673 - 3,234,959 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v043,080,444 - 3,105,999 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.142,982,906 - 3,007,548 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl42,982,906 - 3,007,548 (-)Ensemblpanpan1.1panPan2
NOP14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1361,330,987 - 61,350,596 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl361,330,981 - 61,350,596 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha363,914,652 - 63,934,231 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0361,806,623 - 61,826,198 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl361,806,596 - 61,826,196 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1361,298,169 - 61,317,750 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0361,502,829 - 61,522,440 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0361,862,425 - 61,882,036 (+)NCBIUU_Cfam_GSD_1.0
Nop14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528566,967,157 - 66,988,239 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647720,668,688 - 20,691,694 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647720,668,817 - 20,689,931 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOP14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12745,765,452 - 45,803,010 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2745,765,603 - 45,806,730 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660512,131,316 - 2,159,361 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nop14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475524,831,023 - 24,849,778 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475524,830,885 - 24,849,798 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NOP14
632 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000009511   ⟹   ENSSSCP00000009267
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl81,716,826 - 1,737,902 (-)Ensembl
RefSeq Acc Id: XM_005666511   ⟹   XP_005666568
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.181,717,019 - 1,737,971 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005666568   ⟸   XM_005666511
- UniProtKB: F1S8P8 (UniProtKB/TrEMBL),   A0A8D0ZQD1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000009267   ⟸   ENSSSCT00000009511


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008693 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015020299 UniProtKB/TrEMBL
  ENSSSCG00025076492 UniProtKB/TrEMBL
  ENSSSCG00035041287 UniProtKB/TrEMBL
  ENSSSCG00045009868 UniProtKB/TrEMBL
  ENSSSCG00055007864 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000009511 ENTREZGENE
  ENSSSCT00000009511.4 UniProtKB/TrEMBL
  ENSSSCT00015027113.1 UniProtKB/TrEMBL
  ENSSSCT00015027194.1 UniProtKB/TrEMBL
  ENSSSCT00015027345.1 UniProtKB/TrEMBL
  ENSSSCT00015027646.1 UniProtKB/TrEMBL
  ENSSSCT00025105962.1 UniProtKB/TrEMBL
  ENSSSCT00035054859.1 UniProtKB/TrEMBL
  ENSSSCT00045016731.1 UniProtKB/TrEMBL
  ENSSSCT00055015388.1 UniProtKB/TrEMBL
  ENSSSCT00055015509.1 UniProtKB/TrEMBL
InterPro Nop14 UniProtKB/TrEMBL
NCBI Gene NOP14 ENTREZGENE
PANTHER NUCLEOLAR PROTEIN 14 UniProtKB/TrEMBL
  PTHR23183 UniProtKB/TrEMBL
Pfam Nop14 UniProtKB/TrEMBL
UniProt A0A8D0MYE2_PIG UniProtKB/TrEMBL
  A0A8D0N2A8_PIG UniProtKB/TrEMBL
  A0A8D0TXY6_PIG UniProtKB/TrEMBL
  A0A8D0TY79_PIG UniProtKB/TrEMBL
  A0A8D0ZQD1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PYW5_PIG UniProtKB/TrEMBL
  F1S8P8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:90820 ENTREZGENE