SLC25A17 (solute carrier family 25 member 17) - Rat Genome Database

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Pathways
Gene: SLC25A17 (solute carrier family 25 member 17) Sus scrofa
Analyze
Symbol: SLC25A17
Name: solute carrier family 25 member 17
RGD ID: 14273343
Description: ENCODES a protein that exhibits ADP transmembrane transporter activity (inferred); AMP transmembrane transporter activity (inferred); ATP transmembrane transporter activity (inferred); INVOLVED IN ADP transport (inferred); AMP transport (inferred); ATP transport (inferred); ASSOCIATED WITH cervical cancer (ortholog); clear cell renal cell carcinoma (ortholog); esophageal cancer (ortholog); FOUND IN cytoplasm (inferred); membrane (inferred); peroxisomal membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: peroxisomal membrane protein PMP34
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl57,622,646 - 7,670,283 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.157,622,638 - 7,669,980 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.254,802,932 - 4,850,242 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC25A17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl57,622,646 - 7,670,283 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.157,622,638 - 7,669,980 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.254,802,932 - 4,850,242 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382240,769,630 - 40,819,346 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2240,769,630 - 40,819,402 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh372241,165,634 - 41,215,350 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362239,495,582 - 39,545,338 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342239,490,136 - 39,539,892NCBI
Celera2224,969,310 - 25,019,057 (-)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2224,127,718 - 24,177,419 (-)NCBIHuRef
CHM1_12241,122,961 - 41,174,127 (-)NCBICHM1_1
T2T-CHM13v2.02241,241,822 - 41,291,529 (-)NCBIT2T-CHM13v2.0
Slc25a17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391581,203,122 - 81,244,966 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1581,203,110 - 81,245,117 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381581,318,921 - 81,360,765 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1581,318,911 - 81,360,812 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv371581,149,351 - 81,191,195 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361581,146,176 - 81,188,020 (-)NCBIMGSCv36mm8
Celera1583,437,113 - 83,478,835 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.05NCBI
Slc25a17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87114,724,533 - 114,767,163 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7114,724,533 - 114,767,345 (-)EnsemblGRCr8
mRatBN7.27112,844,375 - 112,887,014 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7112,844,375 - 112,925,945 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7114,606,733 - 114,649,303 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07116,830,282 - 116,872,855 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07116,799,640 - 116,842,215 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd7116,758,515 - 116,801,058 (-)NCBI
Lyon_Normotensive7117,705,358 - 117,747,722 (-)NCBI
Lyon_Hypertensive7117,831,026 - 117,873,385 (-)NCBI
F344_StmMcwi7116,316,942 - 116,359,616 (-)NCBI
Rnor_6.07122,539,293 - 122,581,777 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7122,539,293 - 122,581,777 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.07122,515,166 - 122,557,399 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47119,645,403 - 119,690,130 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7109,163,432 - 109,206,023 (-)NCBICelera
RGSC_v3.17119,679,639 - 119,691,438 (-)NCBI
Cytogenetic Map7q34NCBI
Slc25a17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541326,421,834 - 26,474,199 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495541326,423,805 - 26,474,158 (-)NCBIChiLan1.0ChiLan1.0
SLC25A17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22350,601,323 - 50,650,292 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12253,301,025 - 53,350,170 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02221,665,210 - 21,714,596 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12239,761,002 - 39,810,556 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2239,761,007 - 39,810,556 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
SLC25A17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11024,417,294 - 24,462,057 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1024,417,155 - 24,461,964 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1024,351,357 - 24,396,534 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01025,164,998 - 25,211,889 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1025,165,031 - 25,213,315 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11024,880,115 - 24,924,966 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01025,201,209 - 25,246,549 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01025,375,510 - 25,420,969 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc25a17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap167,051,764 - 7,103,783 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_0244049458,004,297 - 8,056,299 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364921,014,703 - 1,068,515 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364921,015,121 - 1,066,802 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap11910,058,834 - 10,107,834 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_023666045102,201,103 - 102,250,280 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.11923,323,925 - 23,368,368 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Slc25a17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247527,670,918 - 7,727,015 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046247527,670,951 - 7,726,655 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl56,572,841 - 6,629,067 (+)Ensembl
Slc25a17
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11251,068,485 - 251,112,737 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in SLC25A17
2856 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000000078   ⟹   ENSSSCP00000000077
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl57,622,646 - 7,669,969 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000046906   ⟹   ENSSSCP00000043188
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl57,622,719 - 7,670,283 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000050054   ⟹   ENSSSCP00000039249
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl57,622,678 - 7,669,918 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000054524   ⟹   ENSSSCP00000050005
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl57,622,719 - 7,670,283 (+)Ensembl
RefSeq Acc Id: XM_003126004   ⟹   XP_003126052
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.157,622,638 - 7,669,980 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003126052 (Get FASTA)   NCBI Sequence Viewer  
  XP_084811374 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000000077.4
  ENSSSCP00000039249.2
  ENSSSCP00000043188.1
  ENSSSCP00000050005.1
RefSeq Acc Id: XP_003126052   ⟸   XM_003126004
- Sequence:
Ensembl Acc Id: ENSSSCP00000050005   ⟸   ENSSSCT00000054524
Ensembl Acc Id: ENSSSCP00000039249   ⟸   ENSSSCT00000050054
Ensembl Acc Id: ENSSSCP00000043188   ⟸   ENSSSCT00000046906
Ensembl Acc Id: ENSSSCP00000000077   ⟸   ENSSSCT00000000078


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000072 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000078.5 UniProtKB/TrEMBL
  ENSSSCT00000046906.3 UniProtKB/TrEMBL
  ENSSSCT00000050054.3 UniProtKB/TrEMBL
  ENSSSCT00000054524.3 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mit_carrier UniProtKB/TrEMBL
  Mito/Peroxisomal_Carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100517713 UniProtKB/TrEMBL
NCBI Gene SLC25A17 ENTREZGENE
PANTHER PEROXISOMAL MEMBRANE PROTEIN PMP34 UniProtKB/TrEMBL
  PEROXISOMAL MEMBRANE PROTEIN PMP34-RELATED UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A287A606_PIG UniProtKB/TrEMBL
  A0A287AH37_PIG UniProtKB/TrEMBL
  A0A287B1G7_PIG UniProtKB/TrEMBL
  F1SRB8_PIG UniProtKB/TrEMBL
VGNC ID VGNC:92996 ENTREZGENE