JAKMIP3 (Janus kinase and microtubule interacting protein 3) - Rat Genome Database

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Gene: JAKMIP3 (Janus kinase and microtubule interacting protein 3) Sus scrofa
Analyze
Symbol: JAKMIP3
Name: Janus kinase and microtubule interacting protein 3
RGD ID: 14123999
Description: ENCODES a protein that exhibits kinase binding (inferred); microtubule binding (inferred); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: janus kinase and microtubule-interacting protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14140,397,188 - 140,493,774 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114140,397,146 - 140,495,317 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214152,229,976 - 152,309,716 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
JAKMIP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14140,397,188 - 140,493,774 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114140,397,146 - 140,495,317 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214152,229,976 - 152,309,716 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JAKMIP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810132,036,364 - 132,184,858 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10132,036,336 - 132,184,858 (+)EnsemblGRCh38hg38GRCh38
GRCh3710133,849,868 - 133,998,362 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610133,768,303 - 133,830,527 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410133,805,421 - 133,848,302NCBI
Celera10127,562,508 - 127,643,434 (+)NCBICelera
Cytogenetic Map10q26.3NCBI
HuRef10127,467,260 - 127,550,043 (+)NCBIHuRef
CHM1_110134,200,215 - 134,280,494 (+)NCBICHM1_1
T2T-CHM13v2.010132,976,652 - 133,128,086 (+)NCBIT2T-CHM13v2.0
Jakmip3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397138,542,057 - 138,663,893 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7138,542,459 - 138,663,892 (+)EnsemblGRCm39 Ensembl
GRCm387138,940,730 - 139,083,976 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7138,940,730 - 139,083,977 (+)EnsemblGRCm38mm10GRCm38
MGSCv377146,132,433 - 146,218,525 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv377146,248,506 - 146,269,875 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367138,779,404 - 138,865,191 (+)NCBIMGSCv36mm8
MGSCv36128,386,377 - 8,534,544 (-)NCBIMGSCv36mm8
Celera7138,757,548 - 138,879,325 (+)NCBICelera
Cytogenetic Map7F4NCBI
cM Map783.0NCBI
Jakmip3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81203,182,764 - 203,310,714 (+)NCBIGRCr8
mRatBN7.21193,753,134 - 193,881,105 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1193,811,513 - 193,881,104 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1202,181,878 - 202,251,466 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01209,316,715 - 209,386,257 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01201,990,201 - 202,059,739 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01211,292,604 - 211,421,023 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1211,351,350 - 211,421,022 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01218,219,463 - 218,347,772 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41198,793,647 - 198,864,034 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11198,884,806 - 198,980,609 (+)NCBI
Celera1191,501,095 - 191,570,038 (+)NCBICelera
Cytogenetic Map1q41NCBI
Jakmip3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554779,680,798 - 9,807,420 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554779,681,239 - 9,827,704 (+)NCBIChiLan1.0ChiLan1.0
JAKMIP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28143,993,759 - 144,151,225 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110143,999,121 - 144,156,582 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010128,763,675 - 128,853,537 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110132,955,051 - 133,076,993 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10132,993,545 - 133,056,352 (+)Ensemblpanpan1.1panPan2
JAKMIP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12840,101,607 - 40,152,821 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2840,101,267 - 40,157,243 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2840,137,990 - 40,235,392 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02840,718,565 - 40,816,531 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2840,718,549 - 40,803,055 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12840,227,416 - 40,300,462 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02840,191,250 - 40,288,347 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02840,590,251 - 40,687,628 (+)NCBIUU_Cfam_GSD_1.0
Jakmip3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244072136,979,693 - 7,079,767 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648618,509,166 - 18,567,463 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648618,481,413 - 18,583,030 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JAKMIP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19124,630,893 - 124,775,995 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9124,657,592 - 124,754,528 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604886,142,523 - 86,221,646 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Jakmip3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473714,643,770 - 14,744,107 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473714,626,402 - 14,775,749 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in JAKMIP3
4398 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
8 4 23 3 5 13 11 23 2 4 1

Sequence


Ensembl Acc Id: ENSSSCT00000023262   ⟹   ENSSSCP00000024977
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14140,397,188 - 140,493,743 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000040244   ⟹   ENSSSCP00000055573
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14140,413,102 - 140,493,774 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000050812   ⟹   ENSSSCP00000053463
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14140,429,492 - 140,476,007 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000068850   ⟹   ENSSSCP00000061622
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14140,397,187 - 140,493,740 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000087976   ⟹   ENSSSCP00000067751
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14140,429,492 - 140,493,774 (+)Ensembl
RefSeq Acc Id: XM_013981814   ⟹   XP_013837268
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114140,411,205 - 140,495,317 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013981817   ⟹   XP_013837271
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114140,397,146 - 140,495,317 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013981827   ⟹   XP_013837281
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114140,397,474 - 140,495,317 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013981833   ⟹   XP_013837287
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114140,411,205 - 140,495,317 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013981852   ⟹   XP_013837306
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114140,411,205 - 140,495,317 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013981857   ⟹   XP_013837311
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114140,411,205 - 140,495,317 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013837271   ⟸   XM_013981817
- Peptide Label: isoform X1
- UniProtKB: A0A4X1V714 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013837281   ⟸   XM_013981827
- Peptide Label: isoform X1
- UniProtKB: A0A4X1V714 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013837268   ⟸   XM_013981814
- Peptide Label: isoform X1
- UniProtKB: A0A4X1V714 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013837287   ⟸   XM_013981833
- Peptide Label: isoform X2
- UniProtKB: A0A4X1V714 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013837306   ⟸   XM_013981852
- Peptide Label: isoform X3
- UniProtKB: A0A4X1V714 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013837311   ⟸   XM_013981857
- Peptide Label: isoform X4
- UniProtKB: A0A4X1V714 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000055573   ⟸   ENSSSCT00000040244
Ensembl Acc Id: ENSSSCP00000061622   ⟸   ENSSSCT00000068850
Ensembl Acc Id: ENSSSCP00000053463   ⟸   ENSSSCT00000050812
Ensembl Acc Id: ENSSSCP00000067751   ⟸   ENSSSCT00000087976
Ensembl Acc Id: ENSSSCP00000024977   ⟸   ENSSSCT00000023262

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000024633 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070022367 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023262 ENTREZGENE
  ENSSSCT00000023262.4 UniProtKB/TrEMBL
  ENSSSCT00000040244 ENTREZGENE
  ENSSSCT00000040244.3 UniProtKB/TrEMBL
  ENSSSCT00000050812 ENTREZGENE
  ENSSSCT00000050812.3 UniProtKB/TrEMBL
  ENSSSCT00000087976.2 UniProtKB/TrEMBL
  ENSSSCT00070044448.1 UniProtKB/TrEMBL
InterPro JAKMIP UniProtKB/TrEMBL
  JAKMIP_C UniProtKB/TrEMBL
NCBI Gene JAKMIP3 ENTREZGENE
PANTHER JANUS KINASE AND MICROTUBULE-INTERACTING PROTEIN 3 UniProtKB/TrEMBL
  PTHR18935 UniProtKB/TrEMBL
Pfam JAKMIP_CC3 UniProtKB/TrEMBL
UniProt A0A287BAD0_PIG UniProtKB/TrEMBL
  A0A287BG61_PIG UniProtKB/TrEMBL
  A0A4X1V714 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R0M1_PIG UniProtKB/TrEMBL
  I3LLK7_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89275 ENTREZGENE