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Gene: LOC100515706 (olfactory receptor 4D6) Sus scrofa

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Symbol:

LOC100515706

Name:

olfactory receptor 4D6

RGD ID:

14106537

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	2	11,990,370 - 11,991,314 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	11,464,578 - 11,465,522 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

leukocyte adhesion deficiency 3 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IBA,IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IBA,IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC100515706
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	2	11,990,370 - 11,991,314 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	11,464,578 - 11,465,522 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OR4D6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	59,456,961 - 59,457,905 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	59,456,961 - 59,457,905 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	59,224,434 - 59,225,378 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	58,981,010 - 58,981,954 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	58,981,009 - 58,981,954	NCBI
Celera	11	56,585,714 - 56,586,658 (+)	NCBI		Celera
Cytogenetic Map	11	q12.1	NCBI
HuRef	11	55,572,206 - 55,573,150 (+)	NCBI		HuRef
CHM1_1	11	59,090,182 - 59,091,126 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	59,407,797 - 59,408,741 (+)	NCBI		T2T-CHM13v2.0

Or4d6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	12,085,964 - 12,093,192 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	12,085,080 - 12,093,261 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	12,108,600 - 12,115,828 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	12,107,716 - 12,115,897 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	12,183,090 - 12,184,034 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	12,175,645 - 12,176,589 (-)	NCBI		MGSCv36	mm8
Celera	19	12,806,032 - 12,806,976 (-)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	8.61	NCBI

Or4d6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	218,463,801 - 218,464,745 (-)	NCBI		GRCr8
mRatBN7.2	1	209,039,073 - 209,040,017 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	209,037,992 - 209,045,985 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	217,413,730 - 217,414,674 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	224,392,632 - 224,393,576 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	217,168,165 - 217,169,109 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	228,545,913 - 228,546,857 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	228,545,913 - 228,546,857 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	235,609,179 - 235,610,123 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	214,963,770 - 214,964,714 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	215,122,199 - 215,123,144 (-)	NCBI
Celera	1	206,505,123 - 206,506,067 (-)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

LOC102010825
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955511	3,967,106 - 3,968,050 (+)	NCBI	ChiLan1.0	ChiLan1.0

LOC100975055
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	60,587,349 - 60,589,198 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	61,629,645 - 61,631,509 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	54,681,596 - 54,683,099 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	58,133,048 - 58,133,991 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	58,133,048 - 58,133,991 (+)	Ensembl	panpan1.1		panPan2

OR4D6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	37,275,086 - 37,276,021 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	37,275,086 - 37,276,021 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	36,924,473 - 36,925,408 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	37,915,635 - 37,916,570 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	37,915,635 - 37,916,570 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	37,505,422 - 37,506,357 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	37,081,831 - 37,082,766 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	37,711,501 - 37,712,436 (-)	NCBI		UU_Cfam_GSD_1.0

LOC101958212
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	13,134,236 - 13,135,269 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936581	3,248,058 - 3,249,091 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC103234928
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	14,132,336 - 14,135,045 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	111,454,708 - 111,455,749 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in LOC100515706
129 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021085460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU928809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021085460 ⟹ XP_020941119

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	11,990,370 - 11,991,314 (-)	NCBI

Sequence:

show sequence

ATGGTCCAGAGCAACCACACCAACGTGAAGGAATTTGTCTTCCTGGAAATCACTCACTTCCGGG
AACTGGAGCTTTTCTTGTTTGTGGCTTTCCTTGCTGTTTATGTAGCAACTGTGCTGGGCAATGC
CCTCATTGTAGTGACCATCACCTGCGAGTCCCCCCTCCACACTCCCATGTACTTTCTCCTGCGG
AACAAATCTGTCCTGGACATTGCTTTTTCATCTGTCACCGTTCCCAAATTCCTGGTGGATCTTT
TATCAGAGAGGAAAGCCATCTCCTACGATGGCTGCATGGCTCAGATCTTTTTCTTCCACTTTGC
TGGTGGGGCAGATATTTTTTTCCTCTCTGTGATGGCCTATGACAGATACCTTGCAATCTCCAAA
CCTCTGCACTATGTAACCATTATGAGGAGAGAGTTGTGGTTGGCCTTGGTGGTGGCTTCCTGGG
TGGGTGGTGGTTTGCACTCCATTGTTCAGATTATTCTGATGCTTCCACTCCCCTTCTGTGGCCC
CAATGTCCTGGTTGCCTTCTACTGTGACGTGCCCCAGGTGGTTAAGCTGGCCTGCACCGACACC
TTTGCTCTGGAGCTGCTCATGATCTCTAACAATGGGCTGGTGACCCTGCTGTGGTTGCTCTTGC
TCCTGGGGTCCTACACGAGCATTCTGGTGATGCTGAGATCTCATTCTGGGGAGGGCCGGAACAA
AGCCCTCTCCACCTGCACCTCCCACATCCTGGTGGTGACTCTTCATTTCGTGCCTTGCGTGTAC
ATCTACTGCCGGCCCTTCTCTACGCTGCCCATGGACACAGCTGTGTCCATCAGTAACACAGTCC
TCACCCCCATGCTGAACCCCATGATCTACACTCTGAGGAACCAGGAGATGAAGTCAGCCATGAA
GAGAATGCAGAGGTGGCTTGGGCCTTTTGAAAGCAATAAATTGGGATGA

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Protein Sequences


Protein RefSeqs	XP_020941119	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000073631
	ENSSSCP00015016433.1
	ENSSSCP00035031211.1
	ENSSSCP00065009633.1

RefSeq Acc Id:

XP_020941119 ⟸ XM_021085460

- UniProtKB:

A0A5G2R979 (UniProtKB/TrEMBL), A0A8D0NBL1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVQSNHTNVKEFVFLEITHFRELELFLFVAFLAVYVATVLGNALIVVTITCESPLHTPMYFLLR
NKSVLDIAFSSVTVPKFLVDLLSERKAISYDGCMAQIFFFHFAGGADIFFLSVMAYDRYLAISK
PLHYVTIMRRELWLALVVASWVGGGLHSIVQIILMLPLPFCGPNVLVAFYCDVPQVVKLACTDT
FALELLMISNNGLVTLLWLLLLLGSYTSILVMLRSHSGEGRNKALSTCTSHILVVTLHFVPCVY
IYCRPFSTLPMDTAVSISNTVLTPMLNPMIYTLRNQEMKSAMKRMQRWLGPFESNKLG

hide sequence

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000051402	ENTREZGENE
	ENSSSCG00015031457	UniProtKB/TrEMBL
	ENSSSCG00035057126	UniProtKB/TrEMBL
	ENSSSCG00065017811	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000086075	ENTREZGENE
	ENSSSCT00015041593.1	UniProtKB/TrEMBL
	ENSSSCT00035076393.1	UniProtKB/TrEMBL
	ENSSSCT00065023657.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
	Olfactory_Receptors	UniProtKB/TrEMBL
NCBI Gene	LOC100515706	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 4D6	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A5G2R979	ENTREZGENE
	A0A8D0NBL1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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