ATP5MK (ATP synthase membrane subunit k) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: ATP5MK (ATP synthase membrane subunit k) Sus scrofa
Analyze
Symbol: ATP5MK
Name: ATP synthase membrane subunit k
RGD ID: 14076408
Description: ASSOCIATED WITH desmoplastic/nodular medulloblastoma (ortholog); mitochondrial complex V (ATP synthase) deficiency nuclear type 6 (ortholog); FOUND IN membrane (inferred); mitochondrial membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP synthase membrane subunit DAPIT; ATP5MD; up-regulated during skeletal muscle growth 5 homolog; up-regulated during skeletal muscle growth protein 5; USMG5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14114,321,622 - 114,327,485 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114114,321,616 - 114,327,517 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP5MK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14114,321,622 - 114,327,485 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114114,321,616 - 114,327,517 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ATP5MK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810103,389,050 - 103,396,475 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10103,389,041 - 103,396,492 (-)EnsemblGRCh38hg38GRCh38
GRCh3710105,148,807 - 105,156,232 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610105,138,804 - 105,146,213 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410105,138,803 - 105,146,213NCBI
Celera1098,888,747 - 98,896,156 (-)NCBICelera
Cytogenetic Map10q24.33NCBI
HuRef1098,779,600 - 98,787,063 (-)NCBIHuRef
CHM1_110105,432,926 - 105,440,389 (-)NCBICHM1_1
T2T-CHM13v2.010104,276,349 - 104,283,775 (-)NCBIT2T-CHM13v2.0
Atp5mk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391947,071,910 - 47,079,086 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1947,071,903 - 47,079,086 (-)EnsemblGRCm39 Ensembl
GRCm381947,083,471 - 47,090,647 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1947,083,464 - 47,090,647 (-)EnsemblGRCm38mm10GRCm38
MGSCv371947,157,961 - 47,165,115 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361947,136,782 - 47,143,936 (-)NCBIMGSCv36mm8
Celera1947,852,512 - 47,859,670 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1939.23NCBI
Atp5mk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81255,915,255 - 255,922,185 (-)NCBIGRCr8
mRatBN7.21245,973,910 - 245,980,702 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1086,208,712 - 86,208,888 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1245,973,914 - 245,980,761 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1175,153,998 - 175,154,310 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01182,340,041 - 182,340,353 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01253,442,979 - 253,449,821 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01266,859,961 - 266,866,753 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1266,862,579 - 266,862,842 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01274,290,372 - 274,297,164 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41252,406,530 - 252,413,322 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1241,745,565 - 241,752,358 (-)NCBICelera
Cytogenetic Map1q54NCBI
Atp5mk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554857,152,426 - 7,159,211 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554857,152,421 - 7,159,211 (+)NCBIChiLan1.0ChiLan1.0
ATP5MK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28115,273,511 - 115,281,011 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110115,278,840 - 115,286,340 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01099,986,940 - 99,994,447 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110103,447,873 - 103,455,541 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10103,447,873 - 103,455,044 (-)Ensemblpanpan1.1panPan2
ATP5MK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12815,761,732 - 15,767,892 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl140,605,100 - 40,605,276 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2815,933,701 - 15,939,869 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02816,237,967 - 16,244,133 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2816,237,971 - 16,243,999 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12815,787,022 - 15,793,201 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02815,814,747 - 15,820,916 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02815,953,422 - 15,959,588 (-)NCBIUU_Cfam_GSD_1.0
Atp5mk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721331,073,151 - 31,079,830 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366002,676,387 - 2,684,780 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366002,676,423 - 2,683,055 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5MK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1996,432,664 - 96,442,110 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl996,432,668 - 96,442,067 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604857,550,425 - 57,557,945 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp5mk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248312,625,021 - 2,633,132 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP5MK
66 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000010958   ⟹   ENSSSCP00000010673
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14114,321,622 - 114,327,485 (-)Ensembl
RefSeq Acc Id: XM_021073491   ⟹   XP_020929150
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114114,321,616 - 114,327,517 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020929150   ⟸   XM_021073491
- UniProtKB: A0A4X1TQQ5 (UniProtKB/TrEMBL),   F1RFD4 (UniProtKB/TrEMBL),   A0A4X1TN07 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000010673   ⟸   ENSSSCT00000010958


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000032165 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015027016 UniProtKB/TrEMBL
  ENSSSCG00025074113 UniProtKB/TrEMBL
  ENSSSCG00030010976 UniProtKB/TrEMBL
  ENSSSCG00035053980 UniProtKB/TrEMBL
  ENSSSCG00040050460 UniProtKB/TrEMBL
  ENSSSCG00045022572 UniProtKB/TrEMBL
  ENSSSCG00050051598 UniProtKB/TrEMBL
  ENSSSCG00055029386 UniProtKB/TrEMBL
  ENSSSCG00060045760 UniProtKB/TrEMBL
  ENSSSCG00065008291 UniProtKB/TrEMBL
  ENSSSCG00070010943 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010958 ENTREZGENE
  ENSSSCT00000010958.4 UniProtKB/TrEMBL
  ENSSSCT00015035916.1 UniProtKB/TrEMBL
  ENSSSCT00025102045.1 UniProtKB/TrEMBL
  ENSSSCT00030015081.1 UniProtKB/TrEMBL
  ENSSSCT00035072053.1 UniProtKB/TrEMBL
  ENSSSCT00040068058.1 UniProtKB/TrEMBL
  ENSSSCT00040068205.1 UniProtKB/TrEMBL
  ENSSSCT00045038509.1 UniProtKB/TrEMBL
  ENSSSCT00050070257.1 UniProtKB/TrEMBL
  ENSSSCT00055058332.1 UniProtKB/TrEMBL
  ENSSSCT00060062105.1 UniProtKB/TrEMBL
  ENSSSCT00065011118.1 UniProtKB/TrEMBL
  ENSSSCT00070021227.1 UniProtKB/TrEMBL
  ENSSSCT00070021233.1 UniProtKB/TrEMBL
InterPro DAPIT UniProtKB/TrEMBL
NCBI Gene ATP5MD ENTREZGENE
PANTHER ATP SYNTHASE MEMBRANE SUBUNIT K, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR34038 UniProtKB/TrEMBL
Pfam ATP_synth_reg UniProtKB/TrEMBL
PRINTS DAPIT UniProtKB/TrEMBL
UniProt A0A4X1TN07 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TQQ5 ENTREZGENE, UniProtKB/TrEMBL
  F1RFD4 ENTREZGENE
UniProt Secondary F1RFD4 UniProtKB/TrEMBL
VGNC ID VGNC:85657 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-11-23 ATP5MK  ATP synthase membrane subunit k  ATP5MD  ATP synthase membrane subunit DAPIT  Symbol and/or name change 19259463 PROVISIONAL