LOC110257887 (heat shock transcription factor, Y-linked-like) - Rat Genome Database

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Gene: LOC110257887 (heat shock transcription factor, Y-linked-like) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC110257887
Name: heat shock transcription factor, Y-linked-like
RGD ID: 14063409
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity (inferred); sequence-specific DNA binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1Y23,944,263 - 23,945,894 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021080885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide FO081854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_021080885   ⟹   XP_020936544
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1Y23,944,263 - 23,945,894 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020936544 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000072856
  ENSSSCP00000072856.1
  ENSSSCP00070002542.1
  ENSSSCP00070021731.1
RefSeq Acc Id: XP_020936544   ⟸   XM_021080885
- UniProtKB: A0A5G2RE51 (UniProtKB/TrEMBL),   A0A4X1SJL8 (UniProtKB/TrEMBL),   A0A4X1U1Y1 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
HSF-type DNA-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000054075 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070001650 UniProtKB/TrEMBL
  ENSSSCG00070013424 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000089883 ENTREZGENE
  ENSSSCT00000089883.1 UniProtKB/TrEMBL
  ENSSSCT00070003084.1 UniProtKB/TrEMBL
  ENSSSCT00070026181.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro HSF_DNA-bd UniProtKB/TrEMBL
  HSF_fam UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene LOC110257887 ENTREZGENE
PANTHER PTHR10015 UniProtKB/TrEMBL
  PTHR10015:SF336 UniProtKB/TrEMBL
Pfam HSF_DNA-bind UniProtKB/TrEMBL
SMART HSF UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt A0A4X1SJL8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U1Y1 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RE51 ENTREZGENE, UniProtKB/TrEMBL