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Gene: LOC100621480 (transcription elongation factor A protein-like 3) Sus scrofa

Analyze

No known orthologs.

Symbol:

LOC100621480

Name:

transcription elongation factor A protein-like 3

RGD ID:

13923707

Description:

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

TCEAL6; transcription elongation factor A like 6

RGD Orthologs

Alliance Orthologs

More Info

homologs ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	X	83,597,173 - 83,599,216 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	97,459,025 - 97,461,069 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:15679890

Genomics

Variants

Variants in LOC100621480
32 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003360392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013990965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021079922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK395450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY609520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU480760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01126673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_003360392 ⟹ XP_003360440

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	X	83,597,173 - 83,599,216 (-)	NCBI

Sequence:

show sequence

CCCCCACACCCGCCTGCCGGTCCTGCGGTCGGGTCCCAGCGCCGTCCGCTTGCGTCGCCCGCGC
AGAACCAGCTCCCTGAGCCGCCCGGGCGGCGGGCAAGTGGGGAGCGGGCTTAGGCGAGCCCCAA
GAGGCGCAGGCCTGGCCCGGGCCCCGCAGGTCTGCGTGTCTGTTCCCAGCACTCTGCAAGGCCA
GAAAAGGAGGAGGAACCTGTCCAGAATCCCTGCAGGACAAGAAAAGGAAGGAAAATCTCAACAT
GGAAAAACTCTGCAAGGAAAATGAAGGAAAGCCGGAAAGCGAGGGAAAGCCAGAGGATGAAGTA
GAGCCTGACAATGAAGGAAAGTCGGATGAGGAAGAAAAACCAGAAGTGGAGGGGAAGTCAGCAC
ATGAGGGAAAGCTCCAGAACGAGGGACAACCAGAAGATGAGGGAAAACCAGAAGACGAAGGGAA
GCAAGAGAAGCAGGGCAAGTCCGAAGATGAGGGAAAACCACCTGGTGAGGGCACGATGGAGTCC
CAGGCAAAGCCAGAGAGTGAGCCACGGGCTGCCGAAAAGCGCCCCGCTGAAGATTACGTACCCC
GGAAAGCCAAAAGGAAAACAGACAGGGTGACAGATGATTCCCCCAAGGACTATGAGGAGGACTT
ACAGGAAAGGCATTTGGGCAGTGAGGAGATGATGAGAGAAGGTGGAGACCTGTCAAGGGCTCAG
GAAGAGCTAAGGAAAAGACAGAAAATGGGTGGTTTTCATTGGATGCAAAGAGATGTACAGGATC
CATTCACCCCAAGGGGGCCACGGGGTGTCAGGGGAATGAGGGGCGGAGGTAGGAGCCAAAGGGG
CTTACATGATATCCCCTATCTTTAATGCCTTTGGCCTTCAATTCTGATTCTCTGATGAGAATGT
CACTGACCCTGCTTTCCCTGGCAGGCATTTGCCAGGCTGCGTGCTTTAACCGTAAGCTGATATT
TGCTTTAGGTGTCACTTGTTACCAGCAGCCTTTTGGTCCAACTACATTGCTGTCTGTGTTTCAG
TAGGGGATTTTCACCCATGTGCATGAAAGAGATGTTCATGGTACACTGTAAAATAACAATAAAG
AAAAATGGTTTTCATAACTGAAAA

hide sequence

RefSeq Acc Id:

XM_013990965 ⟹ XP_013846419

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	X	83,597,179 - 83,598,838 (-)	NCBI

Sequence:

show sequence

CCTGAAATGGAGGGGGCGGGGGAGGGGTGTAACCCTGAAACGTAGGCAAATTCTGGAAATAACC
CCTTTTTACCCTCTGCCCAGAAGGAACTACTAACTTCTGAGTAAAGAGGTCTGCGTGTCTGTTC
CCAGCACTCTGCAAGGCCAGAAAAGGAGGAGGAACCTGTCCAGAATCCCTGCAGGACAAGAAAA
GGAAGGAAAATCTCAACATGGAAAAACTCTGCAAGGAAAATGAAGGAAAGCCGGAAAGCGAGGG
AAAGCCAGAGGATGAAGTAGAGCCTGACAATGAAGGAAAGTCGGATGAGGAAGAAAAACCAGAA
GTGGAGGGGAAGTCAGCACATGAGGGAAAGCTCCAGAACGAGGGACAACCAGAAGATGAGGGAA
AACCAGAAGACGAAGGGAAGCAAGAGAAGCAGGGCAAGTCCGAAGATGAGGGAAAACCACCTGG
TGAGGGCACGATGGAGTCCCAGGCAAAGCCAGAGAGTGAGCCACGGGCTGCCGAAAAGCGCCCC
GCTGAAGATTACGTACCCCGGAAAGCCAAAAGGAAAACAGACAGGGTGACAGATGATTCCCCCA
AGGACTATGAGGAGGACTTACAGGAAAGGCATTTGGGCAGTGAGGAGATGATGAGAGAAGGTGG
AGACCTGTCAAGGGCTCAGGAAGAGCTAAGGAAAAGACAGAAAATGGGTGGTTTTCATTGGATG
CAAAGAGATGTACAGGATCCATTCACCCCAAGGGGGCCACGGGGTGTCAGGGGAATGAGGGGCG
GAGGTAGGAGCCAAAGGGGCTTACATGATATCCCCTATCTTTAATGCCTTTGGCCTTCAATTCT
GATTCTCTGATGAGAATGTCACTGACCCTGCTTTCCCTGGCAGGCATTTGCCAGGCTGCGTGCT
TTAACCGTAAGCTGATATTTGCTTTAGGTGTCACTTGTTACCAGCAGCCTTTTGGTCCAACTAC
ATTGCTGTCTGTGTTTCAGTAGGGGATTTTCACCCATGTGCATGAAAGAGATGTTCATGGTACA
CTGTAAAATAACAATAAAGAAAAATGGTTTTCATAAC

hide sequence

RefSeq Acc Id:

XM_021079922 ⟹ XP_020935581

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	X	83,597,179 - 83,599,208 (-)	NCBI

Sequence:

show sequence

CCCGCCTGCCGGTCCTGCGGTCGGGTCCCAGCGCCGTCCGCTTGCGTCGCCCGCGCAGAACCAG
CTCCCTGAGCCGCCCGGGCGGCGGGCAAGTGGGGAGCGGGCTTAGGCGAGCCCCAAGAGGCGCA
GGCCTGGCCCGGGCCCCGCAGGTCAGTGTGAAGGTCTGCGTGTCTGTTCCCAGCACTCTGCAAG
GCCAGAAAAGGAGGAGGAACCTGTCCAGAATCCCTGCAGGACAAGAAAAGGAAGGAAAATCTCA
ACATGGAAAAACTCTGCAAGGAAAATGAAGGAAAGCCGGAAAGCGAGGGAAAGCCAGAGGATGA
AGTAGAGCCTGACAATGAAGGAAAGTCGGATGAGGAAGAAAAACCAGAAGTGGAGGGGAAGTCA
GCACATGAGGGAAAGCTCCAGAACGAGGGACAACCAGAAGATGAGGGAAAACCAGAAGACGAAG
GGAAGCAAGAGAAGCAGGGCAAGTCCGAAGATGAGGGAAAACCACCTGGTGAGGGCACGATGGA
GTCCCAGGCAAAGCCAGAGAGTGAGCCACGGGCTGCCGAAAAGCGCCCCGCTGAAGATTACGTA
CCCCGGAAAGCCAAAAGGAAAACAGACAGGGTGACAGATGATTCCCCCAAGGACTATGAGGAGG
ACTTACAGGAAAGGCATTTGGGCAGTGAGGAGATGATGAGAGAAGGTGGAGACCTGTCAAGGGC
TCAGGAAGAGCTAAGGAAAAGACAGAAAATGGGTGGTTTTCATTGGATGCAAAGAGATGTACAG
GATCCATTCACCCCAAGGGGGCCACGGGGTGTCAGGGGAATGAGGGGCGGAGGTAGGAGCCAAA
GGGGCTTACATGATATCCCCTATCTTTAATGCCTTTGGCCTTCAATTCTGATTCTCTGATGAGA
ATGTCACTGACCCTGCTTTCCCTGGCAGGCATTTGCCAGGCTGCGTGCTTTAACCGTAAGCTGA
TATTTGCTTTAGGTGTCACTTGTTACCAGCAGCCTTTTGGTCCAACTACATTGCTGTCTGTGTT
TCAGTAGGGGATTTTCACCCATGTGCATGAAAGAGATGTTCATGGTACACTGTAAAATAACAAT
AAAGAAAAATGGTTTTCATAAC

hide sequence

Protein Sequences


Protein RefSeqs	XP_003360440	(Get FASTA)	NCBI Sequence Viewer
	XP_013846419	(Get FASTA)	NCBI Sequence Viewer
	XP_020935581	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000024586
	ENSSSCP00000024586.1
	ENSSSCP00000029879.1
	ENSSSCP00025021047.1
	ENSSSCP00025025586.1
	ENSSSCP00035012404.1
	ENSSSCP00045048835.1
	ENSSSCP00055027171.1
	ENSSSCP00065002136.1
	ENSSSCP00065048315.1
	ENSSSCP00070034967.1
	ENSSSCP00070034980.1
	ENSSSCP00070049166.1

RefSeq Acc Id:

XP_003360440 ⟸ XM_003360392

- UniProtKB:

F1RYC9 (UniProtKB/TrEMBL), A0A4X1VZ85 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEG
KQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEED
LQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQR
GLHDIPYL

hide sequence

RefSeq Acc Id:

XP_020935581 ⟸ XM_021079922

- UniProtKB:

A0A4X1VZ85 (UniProtKB/TrEMBL), F1RYC9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEG
KQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEED
LQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQR
GLHDIPYL

hide sequence

RefSeq Acc Id:

XP_013846419 ⟸ XM_013990965

- UniProtKB:

F1RYC9 (UniProtKB/TrEMBL), A0A4X1VZ85 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEG
KQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEED
LQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQR
GLHDIPYL

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000012531	UniProtKB/TrEMBL
	ENSSSCG00000028062	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025036114	UniProtKB/TrEMBL
	ENSSSCG00025044466	UniProtKB/TrEMBL
	ENSSSCG00035024095	UniProtKB/TrEMBL
	ENSSSCG00045039406	UniProtKB/TrEMBL
	ENSSSCG00055017424	UniProtKB/TrEMBL
	ENSSSCG00065003622	UniProtKB/TrEMBL
	ENSSSCG00065078134	UniProtKB/TrEMBL
	ENSSSCG00070020961	UniProtKB/TrEMBL
	ENSSSCG00070028827	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000025815	ENTREZGENE
	ENSSSCT00000025815.5	UniProtKB/TrEMBL
	ENSSSCT00000033893.4	UniProtKB/TrEMBL
	ENSSSCT00025049240.1	UniProtKB/TrEMBL
	ENSSSCT00025060327.1	UniProtKB/TrEMBL
	ENSSSCT00035031636.1	UniProtKB/TrEMBL
	ENSSSCT00045068615.1	UniProtKB/TrEMBL
	ENSSSCT00055034203.1	UniProtKB/TrEMBL
	ENSSSCT00065004940.1	UniProtKB/TrEMBL
	ENSSSCT00065108193.1	UniProtKB/TrEMBL
	ENSSSCT00070041643.1	UniProtKB/TrEMBL
	ENSSSCT00070041656.1	UniProtKB/TrEMBL
	ENSSSCT00070057838.1	UniProtKB/TrEMBL
InterPro	TF_A-like/BEX	UniProtKB/TrEMBL
KEGG Report	ssc:100524295	UniProtKB/TrEMBL
	ssc:100621480	UniProtKB/TrEMBL
NCBI Gene	LOC100621480	ENTREZGENE
Pfam	BEX	UniProtKB/TrEMBL
UniProt	A0A4X1V058_PIG	UniProtKB/TrEMBL
	A0A4X1VZ85	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1JMT6_PIG	UniProtKB/TrEMBL
	A0A8D1R1X5_PIG	UniProtKB/TrEMBL
	F1RYC9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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