LOC100155793 (olfactory receptor 8K1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC100155793 (olfactory receptor 8K1) Sus scrofa
Analyze
Symbol: LOC100155793
Name: olfactory receptor 8K1
RGD ID: 13885769
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21312,488,059 - 312,489,016 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100155793
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21312,488,059 - 312,489,016 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OR8K1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,346,039 - 56,346,998 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,346,039 - 56,346,998 (+)EnsemblGRCh38hg38GRCh38
GRCh371156,113,515 - 56,114,474 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361155,870,091 - 55,871,050 (+)NCBINCBI36Build 36hg18NCBI36
Build 341155,870,090 - 55,871,050NCBI
Celera1153,453,593 - 53,454,552 (+)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1152,442,833 - 52,443,790 (+)NCBIHuRef
CHM1_11155,979,754 - 55,980,711 (+)NCBICHM1_1
T2T-CHM13v2.01156,283,959 - 56,284,918 (+)NCBIT2T-CHM13v2.0
Or8k1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39286,046,319 - 86,048,055 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl286,045,331 - 86,049,658 (-)EnsemblGRCm39 Ensembl
GRCm38286,215,975 - 86,217,711 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl286,214,987 - 86,219,314 (-)EnsemblGRCm38mm10GRCm38
MGSCv37286,056,915 - 86,057,865 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36286,017,597 - 86,018,547 (-)NCBIMGSCv36mm8
Celera287,796,250 - 87,797,200 (-)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.75NCBI
Or8k1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8391,624,403 - 91,631,063 (-)NCBIGRCr8
mRatBN7.2371,256,939 - 71,257,889 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl371,256,745 - 71,259,389 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx374,605,345 - 74,606,295 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0383,203,883 - 83,204,833 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0380,987,939 - 80,988,889 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0373,542,138 - 73,543,088 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl373,542,138 - 73,543,088 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0380,195,860 - 80,196,810 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4369,394,531 - 69,395,481 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1369,290,902 - 69,291,853 (-)NCBI
Celera370,550,536 - 70,551,486 (-)NCBICelera
Cytogenetic Map3q24NCBI
LOC100969317
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2957,500,685 - 57,501,642 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11158,516,070 - 58,517,027 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01151,583,771 - 51,584,845 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
OR8K1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11839,559,281 - 39,560,240 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1839,559,281 - 39,560,240 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1839,104,958 - 39,105,917 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01840,236,557 - 40,237,516 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1840,236,557 - 40,237,516 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11839,841,098 - 39,842,057 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01839,408,633 - 39,409,592 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01839,991,727 - 39,992,686 (-)NCBIUU_Cfam_GSD_1.0
LOC101978409
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494716,051,222 - 16,052,178 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365816,165,044 - 6,165,991 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365816,165,044 - 6,166,000 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103235686
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,591,910 - 16,594,256 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl116,592,441 - 16,593,400 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038113,911,641 - 113,912,716 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013987100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Protein Sequences
Protein RefSeqs XP_013842554 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000077525
  ENSSSCP00000077525.1
  ENSSSCP00030025811.1
  ENSSSCP00040035845.1
  ENSSSCP00070006609.1
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000060413 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030040943 UniProtKB/TrEMBL
  ENSSSCG00040060530 UniProtKB/TrEMBL
  ENSSSCG00070004260 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000092083 ENTREZGENE
  ENSSSCT00000092083.1 UniProtKB/TrEMBL
  ENSSSCT00030056841.1 UniProtKB/TrEMBL
  ENSSSCT00040082328.1 UniProtKB/TrEMBL
  ENSSSCT00070008030.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC100155793 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 8K1 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8D0IWQ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FG36_PIG UniProtKB/TrEMBL
  A0A8W4FGT7 ENTREZGENE, UniProtKB/TrEMBL