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Gene: ABHD16B (abhydrolase domain containing 16B) Sus scrofa

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Symbol:

ABHD16B

Name:

abhydrolase domain containing 16B

RGD ID:

13859497

Description:

ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

protein ABHD16B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	62,730,062 - 62,731,474 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	62,729,995 - 62,732,060 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant nocturnal frontal lobe epilepsy (ISO)

benign familial infantile seizures 6 (ISO)

developmental and epileptic encephalopathy (ISO)

developmental and epileptic encephalopathy 33 (ISO)

early infantile epileptic encephalopathy (ISO)

neuronal ceroid lipofuscinosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

monoacylglycerol catabolic process (IBA)

phosphatidylserine catabolic process (IBA)

Cellular Component

nucleoplasm (IEA)

Molecular Function

monoacylglycerol lipase activity (IBA)

phospholipase activity (IBA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

ABHD16B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	62,730,062 - 62,731,474 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	62,729,995 - 62,732,060 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ABHD16B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	63,861,498 - 63,862,988 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	63,861,498 - 63,862,988 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	62,492,851 - 62,494,341 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	61,963,010 - 61,964,785 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	61,963,009 - 61,964,785	NCBI
Celera	20	59,176,749 - 59,178,524 (+)	NCBI		Celera
Cytogenetic Map	20	q13.33	NCBI
HuRef	20	59,225,182 - 59,226,958 (+)	NCBI		HuRef
CHM1_1	20	62,393,380 - 62,395,155 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	65,681,341 - 65,682,831 (+)	NCBI		T2T-CHM13v2.0

Abhd16b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	181,134,999 - 181,136,773 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	181,134,999 - 181,136,773 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	181,493,206 - 181,494,980 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	181,493,206 - 181,494,980 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	181,227,911 - 181,229,685 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	181,422,617 - 181,424,384 (+)	NCBI		MGSCv36	mm8
Celera	2	185,574,847 - 185,576,621 (+)	NCBI		Celera
Cytogenetic Map	2	H4	NCBI
cM Map	2	103.63	NCBI

Abhd16b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	188,972,198 - 188,974,095 (+)	NCBI		GRCr8
mRatBN7.2	3	168,594,677 - 168,596,574 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	168,594,609 - 168,619,762 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	172,974,992 - 172,976,889 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	181,934,087 - 181,935,984 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	178,595,602 - 178,597,499 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	176,985,900 - 176,987,797 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	176,985,900 - 176,987,796 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	180,696,183 - 180,698,080 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	170,627,853 - 170,629,750 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	170,533,888 - 170,535,785 (+)	NCBI
Celera	3	163,990,474 - 163,992,371 (-)	NCBI		Celera
Cytogenetic Map	3	q43	NCBI

Abhd16b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955528	391,749 - 395,181 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955528	391,749 - 395,181 (-)	NCBI	ChiLan1.0	ChiLan1.0

ABHD16B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	69,669,175 - 69,674,709 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	69,663,001 - 69,664,410 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	20	61,783,164 - 61,784,933 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	61,783,486 - 61,784,895 (+)	Ensembl	panpan1.1		panPan2

ABHD16B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	24	46,483,287 - 46,484,804 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	48,488,223 - 48,489,742 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	48,488,223 - 48,489,655 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	47,332,979 - 47,334,491 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	47,457,849 - 47,459,357 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	48,196,124 - 48,197,634 (+)	NCBI		UU_Cfam_GSD_1.0

Abhd16b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	195,614,944 - 195,616,808 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	11,068,762 - 11,070,162 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	11,068,762 - 11,070,162 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ABHD16B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	367,344 - 370,151 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	367,423 - 368,832 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	47,907,700 - 47,909,463 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Abhd16b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624741	29,487,951 - 29,490,234 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in ABHD16B
7 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	mesenchyme	mesoderm	nervous system	renal system	reproductive system
1	1	1	1	1	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021078034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000047845 ⟹ ENSSSCP00000034683

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	17	62,730,062 - 62,731,474 (+)	Ensembl

RefSeq Acc Id:

XM_021078034 ⟹ XP_020933693

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	17	62,729,995 - 62,732,060 (+)	NCBI

Sequence:

show sequence

CCCGCCGTGAGCCCGGCCGGGCCGCAGGGCGTTAGGGCCCAGGTGGCGCCCGGTGGCCTCGACG
CCCATGTGCGTCGTTTGCTTCGTGAAGGCGCTGGTGCACGTGTTCAAAATCTACCTGACCGCCA
ACTACACCTACAACTTCCGCGACTGGCCGGTGGACTTCCGCTGGGACGACGTGTGCGCCGCCGC
CGGGGGTGGCAGCGGTCACGGCGCGCTGACGTGCGCGGCGGCCGCGGCGGGCGTGTGGCTCCTG
CGTGGCGCGGCGCTGGGCGGGGATGCGCCCGGGCGACCGTCGCGCGGGGCGCGCAGCCAGGCGC
AATGCCTCCTGCAGCAGATCCGCGAGCTGCCCGGCCAGCTGGCCAGCTACGCGCTGGCCCACTC
GCTGGGCCGCTGGCTCGTGTACCCCGGCTCCATGTTCCTGATGACACGCGCGCTGCTGCCGCTG
CTGCAGCAGGGCCAGGAGCGCCTGGTGGAGCGCTACGGCGGCCGGCGCGCCAAGCTGGTGGCCT
GCGATGGCAACGAGATCGACACGATGTTCATGGACCGCCGCCAATGTCCGGGCGGCCAGGGCCG
CGGCCTGCGCCTCGTCATCTGCTGCGAAGGCAACGCAGGCTTCTACGAGATGGGCTGCCTCGCG
GCACCGCTGGAGGCCGGCTACTCGGTGCTGGGCTGGAACCACCCGGGCTTCGGGGGCAGCACGG
GCGCGCCGTTCCCTCAGCATGATGCTAACGCCATGGACGTGGTGGTCAAGTACGCGCTGCACCG
CCTGCACTTCCCACCCGCGCACGTGGTGGTCTATGGCTGGTCTATCGGCGGCTTCACAGCCACC
TGGGCCACGATGACGTACCCGGAGCTGGGCGCGCTGGTGCTGGACGCCACCTTCGACGACCTCG
TGCCACTGGCGCTGAAGGTCATGCCGCACTGCTGGAAGGGGCTGGTGGTGCGCACCGTGCGCGA
GCACTTCAACCTCAACGTGGCGGAGCAGCTGTGTCGCTACCCCGGGCCGGTGCTGCTGCTCCGG
CGCACGCAGGACGACGTGGTCAGCACCTCGGGCCACCTGCGCCCCCTGCCGTCCGGCGACGTGG
AGGGCAACCGCGGCAACGAGCTGCTCCTGCGTCTGCTGCAGCACCGCTACCCCGCCGTGATGGC
GCGCGAGGGCCGCGCCGTCGTGACCCGCTGGCTGCGTGCCAGCAGCCTGGCGCAGGAGGCCGCC
TTCTACACGCGCCACCACGTGGATGACGAGTGGTGCCTGGCCCTGCTGCGCTCCTACCGCACGC
GCTGCCAGGACCGGCAGGAGGACGAGGAGGCCTGGGGGCCCCACGGGCTCGCCTTCCCCTGGCT
GGTGGGCCAGGGCCTGAGCCCTCGGCGGCGCCGGCAGCTCGCGCTGTTCCTGGCGCGCAAACAC
CTCAAGAACGTGGAGGCGACTCACTACAGCCGGCTGGAACCAGAGGACTTCCAGTTGCCCTGGA
GGCTGTAGACCTAACTGCGGGTCGGTCTCCCCCCGCCCCCCCACTCCCGCTCCCGCCCCCACTC
CAAATCAGTAAAGCTGGCCCTGCCTGGGGATCCCGACCTGGGGTCTAGGGGAGGGTGGGGCAGG
ACATAGGGACCTGGTGCTCTCCTTAAGTGGGGCGTCCCCTTCCCTTCTTTCTCTTCCCTCCAAC
ACTTGCAGACGTCCCCGTCTGCTCCCAGCTCCTACAGGGAAGGCAAAGATTAACCTGACCCAGT
TTATGGCAATGCTGTGTCATGGGTGCCTTGACCACCTCAAAAGGATGGTGGGAACACCGGCTGT
GGGTCTCCAGGAGGTGTCCTTCACCTGACCTAGGTGGCAGGATGGCTTCAGGAGAGATGAGTGC
TGAAGGGTCTGTGCAAGTCACCCCTAACTGGGAAAGGACACTGGCTCTGGAGGGTTATAAAGGT
CTTAGCAGCTGGGCCTCCTCGGGAGTGTGATGCTACTGATGCTTCATAGGGTTCCCTCCACACA
CTCCATGGCTAATTTTTTTTTTTTTTTTGTCTTTTAGGGTCCCACTGGCGGCATATGGAGGTTC
CCAGGCTAGGGGTTGAAT

hide sequence

Protein Sequences


Protein RefSeqs	XP_020933693	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000034683
	ENSSSCP00000034683.1
	ENSSSCP00025040459.1
	ENSSSCP00030016678.1
	ENSSSCP00040025257.1
	ENSSSCP00045007899.1
	ENSSSCP00055012916.1
	ENSSSCP00065012191.1

RefSeq Acc Id:

XP_020933693 ⟸ XM_021078034

- UniProtKB:

A0A8D1EN36 (UniProtKB/TrEMBL), A0A286ZT91 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MCVVCFVKALVHVFKIYLTANYTYNFRDWPVDFRWDDVCAAAGGGSGHGALTCAAAAAGVWLLR
GAALGGDAPGRPSRGARSQAQCLLQQIRELPGQLASYALAHSLGRWLVYPGSMFLMTRALLPLL
QQGQERLVERYGGRRAKLVACDGNEIDTMFMDRRQCPGGQGRGLRLVICCEGNAGFYEMGCLAA
PLEAGYSVLGWNHPGFGGSTGAPFPQHDANAMDVVVKYALHRLHFPPAHVVVYGWSIGGFTATW
ATMTYPELGALVLDATFDDLVPLALKVMPHCWKGLVVRTVREHFNLNVAEQLCRYPGPVLLLRR
TQDDVVSTSGHLRPLPSGDVEGNRGNELLLRLLQHRYPAVMAREGRAVVTRWLRASSLAQEAAF
YTRHHVDDEWCLALLRSYRTRCQDRQEDEEAWGPHGLAFPWLVGQGLSPRRRRQLALFLARKHL
KNVEATHYSRLEPEDFQLPWRL

hide sequence

Ensembl Acc Id:

ENSSSCP00000034683 ⟸ ENSSSCT00000047845

Protein Domains

AB hydrolase-1

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000035915	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025067139	UniProtKB/TrEMBL
	ENSSSCG00030026162	UniProtKB/TrEMBL
	ENSSSCG00040044894	UniProtKB/TrEMBL
	ENSSSCG00045007017	UniProtKB/TrEMBL
	ENSSSCG00055008399	UniProtKB/TrEMBL
	ENSSSCG00065022405	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000047845	ENTREZGENE
	ENSSSCT00000047845.1	UniProtKB/TrEMBL
	ENSSSCT00025092210.1	UniProtKB/TrEMBL
	ENSSSCT00030036524.1	UniProtKB/TrEMBL
	ENSSSCT00040060196.1	UniProtKB/TrEMBL
	ENSSSCT00045011627.1	UniProtKB/TrEMBL
	ENSSSCT00055016394.1	UniProtKB/TrEMBL
	ENSSSCT00065029807.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.1820	UniProtKB/TrEMBL
InterPro	AB_hydrolase	UniProtKB/TrEMBL
	AB_hydrolase_1	UniProtKB/TrEMBL
NCBI Gene	ABHD16B	ENTREZGENE
PANTHER	ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	PROTEIN ABHD16B	UniProtKB/TrEMBL
Pfam	Abhydrolase_1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53474	UniProtKB/TrEMBL
UniProt	A0A286ZT91	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1EN36	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:95749	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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