Spetex2d (Spetex-2D protein) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Spetex2d (Spetex-2D protein) Rattus norvegicus
Analyze
Symbol: Spetex2d
Name: Spetex-2D protein
RGD ID: 1359263
Description: INTERACTS WITH cefaloridine; Cuprizon; indole-3-methanol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Spetex-2D
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8155,880,984 - 5,883,252 (-)NCBIGRCr8
UTH_Rnor_SHR_Utx155,437,968 - 5,440,236 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.015119,179 - 121,447 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0155,515,526 - 5,517,794 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
RGSC_v3.4155,922,760 - 5,925,028 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1155,494,420 - 5,598,172 (-)NCBI
Cytogenetic Map15p16NCBI


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Molecular cloning of rat Spetex2 family genes mapped on chromosome 15p16, encoding a 23-kilodalton protein associated with the plasma membranes of haploid spermatids. Iwamoto Y, etal., Biol Reprod 2005 Feb;72(2):284-92. Epub 2004 Sep 15.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: NM_001011701   ⟹   NP_001011701
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8155,880,984 - 5,883,252 (-)NCBI
RGSC_v3.4155,922,760 - 5,925,028 (+)RGD
Protein Sequences
Protein RefSeqs NP_001011701 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAD83786 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001011701   ⟸   NM_001011701
- UniProtKB: Q5KT06 (UniProtKB/TrEMBL),   Q5KT07 (UniProtKB/TrEMBL)
Protein Domains
Disks large homolog 5 N-terminal


Additional Information

Database Acc Id Source(s)
InterPro DUF622 UniProtKB/TrEMBL
KEGG Report rno:364260 UniProtKB/TrEMBL
NCBI Gene 364260 ENTREZGENE
PANTHER 2610042L04RIK PROTEIN-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam DUF622 UniProtKB/TrEMBL
PhenoGen Spetex2d PhenoGen
UniProt Q5KT06 ENTREZGENE, UniProtKB/TrEMBL
  Q5KT07 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-05 Spetex2d  Spetex-2D protein  Spetex-2D  Spetex-2D protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 Spetex-2D  Spetex-2D protein      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_other member of a family of genes present in a repeated tandem array 1359751