ZNF202 (zinc finger protein 202) - Rat Genome Database

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Gene: ZNF202 (zinc finger protein 202) Homo sapiens
Analyze
Symbol: ZNF202
Name: zinc finger protein 202
RGD ID: 1353784
HGNC Page HGNC:12994
Description: Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in chromosome; nuclear body; and nucleolus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: zinc finger protein with KRAB and SCAN domains 10; ZKSCAN10; ZSCAN42
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811123,723,914 - 123,741,660 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11123,723,914 - 123,741,675 (-)EnsemblGRCh38hg38GRCh38
GRCh3711123,594,622 - 123,612,368 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611123,100,207 - 123,117,573 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411123,100,206 - 123,117,573NCBI
Celera11120,754,388 - 120,771,754 (-)NCBICelera
Cytogenetic Map11q24.1NCBI
HuRef11119,536,108 - 119,553,476 (-)NCBIHuRef
CHM1_111123,481,431 - 123,498,794 (-)NCBICHM1_1
T2T-CHM13v2.011123,752,703 - 123,770,446 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IDA)
nuclear body  (IDA)
nucleolus  (IDA)
nucleus  (IEA)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889549   PMID:9790754   PMID:10508479   PMID:10747874   PMID:10748193   PMID:11279031   PMID:12444922   PMID:12477932   PMID:14702039   PMID:15489334   PMID:16189514   PMID:16289551  
PMID:16344560   PMID:16415175   PMID:16467280   PMID:18472161   PMID:18523156   PMID:18652945   PMID:19274049   PMID:19336475   PMID:19875103   PMID:19913121   PMID:20211142   PMID:20628086  
PMID:21873635   PMID:21988832   PMID:22944692   PMID:25416956   PMID:28514442   PMID:32296183   PMID:33961781   PMID:34638806   PMID:35914814  


Genomics

Comparative Map Data
ZNF202
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811123,723,914 - 123,741,660 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11123,723,914 - 123,741,675 (-)EnsemblGRCh38hg38GRCh38
GRCh3711123,594,622 - 123,612,368 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611123,100,207 - 123,117,573 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411123,100,206 - 123,117,573NCBI
Celera11120,754,388 - 120,771,754 (-)NCBICelera
Cytogenetic Map11q24.1NCBI
HuRef11119,536,108 - 119,553,476 (-)NCBIHuRef
CHM1_111123,481,431 - 123,498,794 (-)NCBICHM1_1
T2T-CHM13v2.011123,752,703 - 123,770,446 (-)NCBIT2T-CHM13v2.0
Zfp202
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39940,103,612 - 40,124,900 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl940,103,612 - 40,124,900 (+)EnsemblGRCm39 Ensembl
GRCm38940,192,316 - 40,213,604 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl940,192,316 - 40,213,604 (+)EnsemblGRCm38mm10GRCm38
MGSCv37939,999,901 - 40,021,189 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36939,942,897 - 39,963,760 (+)NCBIMGSCv36mm8
Celera937,432,977 - 37,454,278 (+)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map921.42NCBI
Zfp202
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8849,439,849 - 49,460,117 (+)NCBIGRCr8
mRatBN7.2840,542,665 - 40,567,397 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl840,542,701 - 40,563,118 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx846,049,665 - 46,070,655 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0844,328,256 - 44,349,246 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0842,195,860 - 42,216,850 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0844,047,586 - 44,068,990 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl844,047,592 - 44,068,003 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0861,469,449 - 61,489,701 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4843,144,086 - 43,164,338 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera840,158,694 - 40,178,946 (+)NCBICelera
Cytogenetic Map8q22NCBI
Znf202
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541224,469,313 - 24,481,568 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541224,469,313 - 24,481,551 (-)NCBIChiLan1.0ChiLan1.0
ZNF202
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29124,422,727 - 124,442,559 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111125,526,876 - 125,548,472 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011118,554,313 - 118,572,473 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111122,470,920 - 122,489,473 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11122,470,920 - 122,488,201 (-)Ensemblpanpan1.1panPan2
ZNF202
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1510,705,862 - 10,722,372 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl510,707,354 - 10,720,951 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha510,762,017 - 10,778,554 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0510,655,915 - 10,672,461 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl510,655,997 - 10,672,233 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1510,760,367 - 10,776,912 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0510,690,888 - 10,707,437 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0510,736,051 - 10,752,601 (+)NCBIUU_Cfam_GSD_1.0
Znf202
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947105,250,552 - 105,258,736 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365428,171,048 - 8,188,235 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365428,171,040 - 8,178,974 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF202
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl950,584,250 - 50,605,567 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1950,583,590 - 50,605,591 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2955,873,657 - 55,894,975 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF202
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11115,132,037 - 115,149,988 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1115,131,994 - 115,148,139 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604310,960,680 - 10,978,038 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf202
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248801,439,431 - 1,447,092 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248801,428,279 - 1,447,071 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZNF202
29 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 11q23.3-25(chr11:116851395-134998513)x3 copy number gain See cases [RCV000050331] Chr11:116851395..134998513 [GRCh38]
Chr11:116722111..134868407 [GRCh37]
Chr11:116227321..134373617 [NCBI36]
Chr11:11q23.3-25		 pathogenic
GRCh38/hg38 11q23.3-25(chr11:119433909-134998513)x1 copy number loss See cases [RCV000050905] Chr11:119433909..134998513 [GRCh38]
Chr11:119304619..134868407 [GRCh37]
Chr11:118809829..134373617 [NCBI36]
Chr11:11q23.3-25		 pathogenic
GRCh38/hg38 11q23.3-25(chr11:118789765-134998513)x3 copy number gain See cases [RCV000051213] Chr11:118789765..134998513 [GRCh38]
Chr11:118660474..134868407 [GRCh37]
Chr11:118165684..134373617 [NCBI36]
Chr11:11q23.3-25		 pathogenic
GRCh38/hg38 11q23.3-25(chr11:119215032-134998654)x1 copy number loss See cases [RCV000052715] Chr11:119215032..134998654 [GRCh38]
Chr11:119085742..134868548 [GRCh37]
Chr11:118590952..134373758 [NCBI36]
Chr11:11q23.3-25		 pathogenic
GRCh38/hg38 11q23.3-25(chr11:120507265-134576266)x1 copy number loss See cases [RCV000052716] Chr11:120507265..134576266 [GRCh38]
Chr11:120377974..134446160 [GRCh37]
Chr11:119883184..133951370 [NCBI36]
Chr11:11q23.3-25		 pathogenic
GRCh38/hg38 11q22.1-25(chr11:100348599-135040246)x3 copy number gain See cases [RCV000053638] Chr11:100348599..135040246 [GRCh38]
Chr11:100219331..134910140 [GRCh37]
Chr11:99724541..134415350 [NCBI36]
Chr11:11q22.1-25		 pathogenic
GRCh38/hg38 11q23.3-25(chr11:120236432-135040246)x3 copy number gain See cases [RCV000053643] Chr11:120236432..135040246 [GRCh38]
Chr11:120107141..134910140 [GRCh37]
Chr11:119612351..134415350 [NCBI36]
Chr11:11q23.3-25		 pathogenic
GRCh38/hg38 11q23.3-24.2(chr11:120426093-124771213)x1 copy number loss See cases [RCV000134405] Chr11:120426093..124771213 [GRCh38]
Chr11:120296802..124641109 [GRCh37]
Chr11:119802012..124146319 [NCBI36]
Chr11:11q23.3-24.2		 pathogenic
GRCh38/hg38 11q23.3-25(chr11:116851372-134998526)x3 copy number gain See cases [RCV000134064] Chr11:116851372..134998526 [GRCh38]
Chr11:116722088..134868420 [GRCh37]
Chr11:116227298..134373630 [NCBI36]
Chr11:11q23.3-25		 pathogenic
GRCh38/hg38 11q24.1-24.2(chr11:122182443-125957977)x1 copy number loss See cases [RCV000136594] Chr11:122182443..125957977 [GRCh38]
Chr11:122053151..125827872 [GRCh37]
Chr11:121558361..125333082 [NCBI36]
Chr11:11q24.1-24.2		 pathogenic
GRCh38/hg38 11q23.2-25(chr11:112864326-131189315)x3 copy number gain See cases [RCV000137582] Chr11:112864326..131189315 [GRCh38]
Chr11:112832130..131059210 [GRCh37]
Chr11:112240259..130564420 [NCBI36]
Chr11:11q23.2-25		 pathogenic
GRCh38/hg38 11q23.3-25(chr11:116868935-135075271)x3 copy number gain See cases [RCV000137453] Chr11:116868935..135075271 [GRCh38]
Chr11:116739651..134945165 [GRCh37]
Chr11:116244861..134450377 [NCBI36]
Chr11:11q23.3-25		 pathogenic|conflicting data from submitters
GRCh38/hg38 11q24.1-25(chr11:121780459-135075271)x1 copy number loss See cases [RCV000138014] Chr11:121780459..135075271 [GRCh38]
Chr11:121651167..134945165 [GRCh37]
Chr11:121156377..134450377 [NCBI36]
Chr11:11q24.1-25		 pathogenic
GRCh38/hg38 11q23.3-25(chr11:120515759-135075271)x1 copy number loss See cases [RCV000138373] Chr11:120515759..135075271 [GRCh38]
Chr11:120386468..134945165 [GRCh37]
Chr11:119891678..134450377 [NCBI36]
Chr11:11q23.3-25		 pathogenic
GRCh38/hg38 11q23.3-25(chr11:116806268-135075271)x3 copy number gain See cases [RCV000138307] Chr11:116806268..135075271 [GRCh38]
Chr11:116676984..134945165 [GRCh37]
Chr11:116182194..134450377 [NCBI36]
Chr11:11q23.3-25		 pathogenic
GRCh38/hg38 11q23.3-24.2(chr11:117333952-127709156)x3 copy number gain See cases [RCV000139362] Chr11:117333952..127709156 [GRCh38]
Chr11:117204668..127579051 [GRCh37]
Chr11:116709878..127084261 [NCBI36]
Chr11:11q23.3-24.2		 pathogenic
GRCh38/hg38 11q23.3-24.2(chr11:120080142-125829106)x1 copy number loss See cases [RCV000140070] Chr11:120080142..125829106 [GRCh38]
Chr11:119950851..125699001 [GRCh37]
Chr11:119456061..125204211 [NCBI36]
Chr11:11q23.3-24.2		 pathogenic
GRCh38/hg38 11q24.1-25(chr11:121689052-135075271)x1 copy number loss See cases [RCV000139622] Chr11:121689052..135075271 [GRCh38]
Chr11:121559760..134945165 [GRCh37]
Chr11:121064970..134450377 [NCBI36]
Chr11:11q24.1-25		 pathogenic|likely benign
GRCh38/hg38 11q24.1-24.2(chr11:123543649-124802201)x3 copy number gain See cases [RCV000141175] Chr11:123543649..124802201 [GRCh38]
Chr11:123414357..124672097 [GRCh37]
Chr11:122919567..124177307 [NCBI36]
Chr11:11q24.1-24.2		 uncertain significance
GRCh38/hg38 11q24.1-25(chr11:121806547-135068576)x1 copy number loss See cases [RCV000142210] Chr11:121806547..135068576 [GRCh38]
Chr11:121677255..134938470 [GRCh37]
Chr11:121182465..134443680 [NCBI36]
Chr11:11q24.1-25		 pathogenic
GRCh38/hg38 11q24.1-25(chr11:121611476-135068576)x1 copy number loss See cases [RCV000142185] Chr11:121611476..135068576 [GRCh38]
Chr11:121482185..134938470 [GRCh37]
Chr11:120987395..134443680 [NCBI36]
Chr11:11q24.1-25		 pathogenic
GRCh38/hg38 11q24.1(chr11:123187564-123800140)x3 copy number gain See cases [RCV000143220] Chr11:123187564..123800140 [GRCh38]
Chr11:123058272..123670848 [GRCh37]
Chr11:122563482..123176058 [NCBI36]
Chr11:11q24.1		 uncertain significance
GRCh38/hg38 11q23.3-25(chr11:116851395-134998513)x3 copy number gain See cases [RCV000148276] Chr11:116851395..134998513 [GRCh38]
Chr11:116722111..134868407 [GRCh37]
Chr11:116227321..134373617 [NCBI36]
Chr11:11q23.3-25		 pathogenic
GRCh37/hg19 11q23.3-25(chr11:119807473-134868407)x1 copy number loss See cases [RCV000240237] Chr11:119807473..134868407 [GRCh37]
Chr11:11q23.3-25		 pathogenic
GRCh37/hg19 11q23.3-25(chr11:120615374-134868407)x1 copy number loss See cases [RCV000239781] Chr11:120615374..134868407 [GRCh37]
Chr11:11q23.3-25		 pathogenic
GRCh37/hg19 11q23.3-25(chr11:116691675-134889485) copy number gain not provided [RCV000767667] Chr11:116691675..134889485 [GRCh37]
Chr11:11q23.3-25		 pathogenic
GRCh37/hg19 11q23.3-25(chr11:116700253-134904063) copy number gain not provided [RCV000767816] Chr11:116700253..134904063 [GRCh37]
Chr11:11q23.3-25		 pathogenic
GRCh37/hg19 11q24.1-25(chr11:121416261-134938470)x1 copy number loss See cases [RCV000511335] Chr11:121416261..134938470 [GRCh37]
Chr11:11q24.1-25		 pathogenic
GRCh37/hg19 11q23.3-25(chr11:116681007-134938470)x3 copy number gain See cases [RCV000449449] Chr11:116681007..134938470 [GRCh37]
Chr11:11q23.3-25		 pathogenic
GRCh37/hg19 11q24.1(chr11:123024300-123610766)x3 copy number gain See cases [RCV000446130] Chr11:123024300..123610766 [GRCh37]
Chr11:11q24.1		 uncertain significance
GRCh37/hg19 11q24.1-25(chr11:121501072-134868348)x1 copy number loss See cases [RCV000445814] Chr11:121501072..134868348 [GRCh37]
Chr11:11q24.1-25		 pathogenic
GRCh37/hg19 11q23.3-25(chr11:116684163-134938470)x3 copy number gain See cases [RCV000447848] Chr11:116684163..134938470 [GRCh37]
Chr11:11q23.3-25		 pathogenic
GRCh37/hg19 11q24.1-25(chr11:121559102-134938470)x1 copy number loss See cases [RCV000449003] Chr11:121559102..134938470 [GRCh37]
Chr11:11q24.1-25		 pathogenic
GRCh37/hg19 11q24.1-25(chr11:122403610-134938470)x1 copy number loss See cases [RCV000448215] Chr11:122403610..134938470 [GRCh37]
Chr11:11q24.1-25		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470) copy number gain See cases [RCV000511729] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)x3 copy number gain See cases [RCV000510881] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11q24.1-25(chr11:122884694-134938470)x3 copy number gain See cases [RCV000511146] Chr11:122884694..134938470 [GRCh37]
Chr11:11q24.1-25		 pathogenic
GRCh37/hg19 11q23.3-25(chr11:120527021-134938470)x1 copy number loss See cases [RCV000511283] Chr11:120527021..134938470 [GRCh37]
Chr11:11q23.3-25		 pathogenic
GRCh37/hg19 11q23.3-25(chr11:121136603-134938470)x1 copy number loss See cases [RCV000510856] Chr11:121136603..134938470 [GRCh37]
Chr11:11q23.3-25		 pathogenic
GRCh37/hg19 11q23.3-25(chr11:119538664-134938470)x1 copy number loss not provided [RCV000683371] Chr11:119538664..134938470 [GRCh37]
Chr11:11q23.3-25		 pathogenic
GRCh37/hg19 11q23.3-25(chr11:116681007-134938470)x3 copy number gain not provided [RCV000683373] Chr11:116681007..134938470 [GRCh37]
Chr11:11q23.3-25		 pathogenic
Single allele deletion Short stature [RCV001003892] Chr11:114433313..131230466 [GRCh37]
Chr11:11q23.2-25		 likely pathogenic
GRCh37/hg19 11p15.5-q25(chr11:198510-134934063)x3 copy number gain not provided [RCV000737348] Chr11:198510..134934063 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:70864-134938470)x3 copy number gain not provided [RCV000749874] Chr11:70864..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
Single allele duplication Schizophrenia [RCV000754124] Chr11:118989374..135076622 [GRCh38]
Chr11:11q23.3-25		 likely pathogenic
NM_003455.4(ZNF202):c.1458C>T (p.Cys486=) single nucleotide variant not provided [RCV000962448] Chr11:123726486 [GRCh38]
Chr11:123597194 [GRCh37]
Chr11:11q24.1		 benign
NM_003455.4(ZNF202):c.462G>A (p.Val154=) single nucleotide variant not provided [RCV000948878] Chr11:123729766 [GRCh38]
Chr11:123600474 [GRCh37]
Chr11:11q24.1		 benign
GRCh37/hg19 11q23.3-25(chr11:117830263-134938470)x3 copy number gain not provided [RCV000848151] Chr11:117830263..134938470 [GRCh37]
Chr11:11q23.3-25		 pathogenic
GRCh37/hg19 11q23.3-25(chr11:120576984-134934063)x1 copy number loss See cases [RCV000790567] Chr11:120576984..134934063 [GRCh37]
Chr11:11q23.3-25		 pathogenic
GRCh37/hg19 11q23.3-25(chr11:120531028-134257553) copy number loss 11q partial monosomy syndrome [RCV003236728] Chr11:120531028..134257553 [GRCh37]
Chr11:11q23.3-25		 pathogenic
GRCh37/hg19 11q23.3-25(chr11:120742540-134938470)x1 copy number loss not provided [RCV001006452] Chr11:120742540..134938470 [GRCh37]
Chr11:11q23.3-25		 pathogenic
NC_000011.9:g.104288964_134937416dup duplication Distal trisomy 11q [RCV001250234] Chr11:104288964..134937416 [GRCh37]
Chr11:11q22.3-25		 pathogenic
GRCh37/hg19 11q23.1-24.3(chr11:112375478-128785742)x3 copy number gain not provided [RCV001829187] Chr11:112375478..128785742 [GRCh37]
Chr11:11q23.1-24.3		 pathogenic
NC_000011.9:g.(?_123504851)_(126163012_?)dup duplication Holoprosencephaly 11 [RCV001871151] Chr11:123504851..126163012 [GRCh37]
Chr11:11q24.1-24.2		 uncertain significance
NC_000011.9:g.(?_123504851)_(126163012_?)del deletion Holoprosencephaly 11 [RCV003119757]|not provided [RCV003119756] Chr11:123504851..126163012 [GRCh37]
Chr11:11q24.1-24.2		 uncertain significance|no classifications from unflagged records
GRCh37/hg19 11p13-q25(chr11:32799481-134938470)x3 copy number gain MISSED ABORTION [RCV002282973] Chr11:32799481..134938470 [GRCh37]
Chr11:11p13-q25		 pathogenic
NM_003455.4(ZNF202):c.118C>G (p.Pro40Ala) single nucleotide variant not specified [RCV004299707] Chr11:123730771 [GRCh38]
Chr11:123601479 [GRCh37]
Chr11:11q24.1		 uncertain significance
GRCh37/hg19 11q24.1-25(chr11:122975824-134938470)x1 copy number loss not provided [RCV002474497] Chr11:122975824..134938470 [GRCh37]
Chr11:11q24.1-25		 pathogenic
NM_003455.4(ZNF202):c.1652G>A (p.Arg551Gln) single nucleotide variant not specified [RCV004090058] Chr11:123726292 [GRCh38]
Chr11:123597000 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.1307G>A (p.Arg436Gln) single nucleotide variant not specified [RCV004239806] Chr11:123726637 [GRCh38]
Chr11:123597345 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.152G>A (p.Arg51His) single nucleotide variant not specified [RCV004245708] Chr11:123730737 [GRCh38]
Chr11:123601445 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.1678G>A (p.Ala560Thr) single nucleotide variant not specified [RCV004170251] Chr11:123726266 [GRCh38]
Chr11:123596974 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.666C>A (p.Asp222Glu) single nucleotide variant not specified [RCV004241035] Chr11:123729162 [GRCh38]
Chr11:123599870 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.1865C>T (p.Thr622Met) single nucleotide variant not specified [RCV004084049] Chr11:123726079 [GRCh38]
Chr11:123596787 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.1796G>T (p.Gly599Val) single nucleotide variant not specified [RCV004241194] Chr11:123726148 [GRCh38]
Chr11:123596856 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.1773G>T (p.Arg591Ser) single nucleotide variant not specified [RCV004149353] Chr11:123726171 [GRCh38]
Chr11:123596879 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.755G>A (p.Ser252Asn) single nucleotide variant not specified [RCV004234344] Chr11:123728210 [GRCh38]
Chr11:123598918 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.466C>T (p.Pro156Ser) single nucleotide variant not specified [RCV004157259] Chr11:123729762 [GRCh38]
Chr11:123600470 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.83C>A (p.Thr28Asn) single nucleotide variant not specified [RCV004106047] Chr11:123730806 [GRCh38]
Chr11:123601514 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.1661C>T (p.Ala554Val) single nucleotide variant not specified [RCV004093732] Chr11:123726283 [GRCh38]
Chr11:123596991 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.1075G>C (p.Glu359Gln) single nucleotide variant not specified [RCV004122995] Chr11:123726869 [GRCh38]
Chr11:123597577 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.560C>T (p.Pro187Leu) single nucleotide variant not specified [RCV004221228] Chr11:123729668 [GRCh38]
Chr11:123600376 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.977A>T (p.Glu326Val) single nucleotide variant not specified [RCV004268250] Chr11:123726967 [GRCh38]
Chr11:123597675 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.491A>T (p.Asp164Val) single nucleotide variant not specified [RCV004311507] Chr11:123729737 [GRCh38]
Chr11:123600445 [GRCh37]
Chr11:11q24.1		 uncertain significance
Single allele duplication not provided [RCV003448710] Chr11:102134973..134945611 [GRCh37]
Chr11:11q22.2-25		 pathogenic
GRCh37/hg19 11q23.3-24.2(chr11:121183636-127620828)x1 copy number loss not specified [RCV003986915] Chr11:121183636..127620828 [GRCh37]
Chr11:11q23.3-24.2		 pathogenic
GRCh37/hg19 11q24.1-25(chr11:123523103-134938470)x1 copy number loss not specified [RCV003986947] Chr11:123523103..134938470 [GRCh37]
Chr11:11q24.1-25		 pathogenic
GRCh37/hg19 11q24.1-25(chr11:121423232-134938470)x1 copy number loss not specified [RCV003986923] Chr11:121423232..134938470 [GRCh37]
Chr11:11q24.1-25		 pathogenic
NM_003455.4(ZNF202):c.100G>T (p.Val34Phe) single nucleotide variant not specified [RCV004491672] Chr11:123730789 [GRCh38]
Chr11:123601497 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.1334A>C (p.Lys445Thr) single nucleotide variant not specified [RCV004491673] Chr11:123726610 [GRCh38]
Chr11:123597318 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.413A>G (p.His138Arg) single nucleotide variant not specified [RCV004491674] Chr11:123729815 [GRCh38]
Chr11:123600523 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.514G>A (p.Glu172Lys) single nucleotide variant not specified [RCV004491676] Chr11:123729714 [GRCh38]
Chr11:123600422 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.628G>A (p.Glu210Lys) single nucleotide variant not specified [RCV004491678] Chr11:123729200 [GRCh38]
Chr11:123599908 [GRCh37]
Chr11:11q24.1		 uncertain significance
GRCh37/hg19 11q23.3-25(chr11:116683755-134937416)x3 copy number gain not provided [RCV004442759] Chr11:116683755..134937416 [GRCh37]
Chr11:11q23.3-25		 pathogenic
NM_003455.4(ZNF202):c.506C>T (p.Ser169Leu) single nucleotide variant not specified [RCV004491675] Chr11:123729722 [GRCh38]
Chr11:123600430 [GRCh37]
Chr11:11q24.1		 likely benign
NM_003455.4(ZNF202):c.572G>A (p.Arg191His) single nucleotide variant not specified [RCV004491677] Chr11:123729656 [GRCh38]
Chr11:123600364 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.823G>T (p.Val275Phe) single nucleotide variant not specified [RCV004491679] Chr11:123728142 [GRCh38]
Chr11:123598850 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.1624T>A (p.Cys542Ser) single nucleotide variant not specified [RCV004688114] Chr11:123726320 [GRCh38]
Chr11:123597028 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.1825G>A (p.Val609Ile) single nucleotide variant not specified [RCV004688112] Chr11:123726119 [GRCh38]
Chr11:123596827 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.1370T>A (p.Leu457Gln) single nucleotide variant not specified [RCV004688113] Chr11:123726574 [GRCh38]
Chr11:123597282 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.1696C>A (p.Leu566Ile) single nucleotide variant not specified [RCV004688116] Chr11:123726248 [GRCh38]
Chr11:123596956 [GRCh37]
Chr11:11q24.1		 uncertain significance
GRCh38/hg38 11q23.3-25(chr11:119424297-135075271)x1 copy number loss See cases [RCV000138947] Chr11:119424297..135075271 [GRCh38]
Chr11:119295007..134945165 [GRCh37]
Chr11:118800217..134450377 [NCBI36]
Chr11:11q23.3-25		 pathogenic|likely benign
GRCh37/hg19 11q23.3-25(chr11:119513909-134938470)x1 copy number loss See cases [RCV000447077] Chr11:119513909..134938470 [GRCh37]
Chr11:11q23.3-25		 pathogenic
GRCh37/hg19 11q23.3-25(chr11:116681007-134938470)x3 copy number gain See cases [RCV000512291] Chr11:116681007..134938470 [GRCh37]
Chr11:11q23.3-25		 pathogenic
GRCh37/hg19 11q23.3-25(chr11:116697066-134934063)x3 copy number gain not provided [RCV000737686] Chr11:116697066..134934063 [GRCh37]
Chr11:11q23.3-25		 pathogenic
NM_003455.4(ZNF202):c.730G>A (p.Val244Ile) single nucleotide variant not specified [RCV004266361] Chr11:123728235 [GRCh38]
Chr11:123598943 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.1700G>T (p.Cys567Phe) single nucleotide variant not specified [RCV004351857] Chr11:123726244 [GRCh38]
Chr11:123596952 [GRCh37]
Chr11:11q24.1		 uncertain significance
NM_003455.4(ZNF202):c.19C>T (p.Pro7Ser) single nucleotide variant not specified [RCV004688115] Chr11:123730870 [GRCh38]
Chr11:123601578 [GRCh37]
Chr11:11q24.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2934
Count of miRNA genes:897
Interacting mature miRNAs:1072
Transcripts:ENST00000336139, ENST00000525391, ENST00000526252, ENST00000528306, ENST00000529250, ENST00000529691, ENST00000530393, ENST00000530944, ENST00000533463
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406962737GWAS611713_Hresponse to antipsychotic drug QTL GWAS611713 (human)0.0000004response to antipsychotic drug11123725219123725220Human
1559115SCL20_HSerum cholesterol level QTL 20 (human)3.220.001213Lipid levelLDL cholesterol11100442501126442501Human

Markers in Region
STS-AA010085  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711123,595,992 - 123,596,240UniSTSGRCh37
Build 3611123,101,202 - 123,101,450RGDNCBI36
Celera11120,755,383 - 120,755,631RGD
Cytogenetic Map11q23.3UniSTS
HuRef11119,537,103 - 119,537,351UniSTS
GeneMap99-GB4 RH Map11408.11UniSTS
SHGC-12982  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711123,602,298 - 123,602,628UniSTSGRCh37
Build 3611123,107,508 - 123,107,838RGDNCBI36
Celera11120,761,689 - 120,762,019RGD
Cytogenetic Map11q23.3UniSTS
HuRef11119,543,409 - 119,543,739UniSTS
Stanford-G3 RH Map115613.0UniSTS
NCBI RH Map111024.0UniSTS
RH64948  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711123,594,771 - 123,594,916UniSTSGRCh37
Build 3611123,099,981 - 123,100,126RGDNCBI36
Celera11120,754,162 - 120,754,307RGD
Cytogenetic Map11q23.3UniSTS
HuRef11119,535,882 - 119,536,027UniSTS
SHGC-142850  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711123,597,761 - 123,598,047UniSTSGRCh37
Build 3611123,102,971 - 123,103,257RGDNCBI36
Celera11120,757,152 - 120,757,438RGD
Cytogenetic Map11q23.3UniSTS
HuRef11119,538,872 - 119,539,158UniSTS
TNG Radiation Hybrid Map1157381.0UniSTS
WI-22370  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711123,595,508 - 123,595,766UniSTSGRCh37
Build 3611123,100,718 - 123,100,976RGDNCBI36
Celera11120,754,899 - 120,755,157RGD
Cytogenetic Map11q23.3UniSTS
HuRef11119,536,619 - 119,536,877UniSTS
GeneMap99-GB4 RH Map11408.11UniSTS
Whitehead-RH Map11565.8UniSTS
D11S4600  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711123,595,555 - 123,595,704UniSTSGRCh37
Build 3611123,100,765 - 123,100,914RGDNCBI36
Celera11120,754,946 - 120,755,095RGD
Cytogenetic Map11q23.3UniSTS
HuRef11119,536,666 - 119,536,815UniSTS
SGC35198  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711123,594,646 - 123,594,770UniSTSGRCh37
Build 3611123,099,856 - 123,099,980RGDNCBI36
Celera11120,754,037 - 120,754,161RGD
Cytogenetic Map11q23.3UniSTS
HuRef11119,535,757 - 119,535,881UniSTS
GeneMap99-GB4 RH Map11409.64UniSTS
Whitehead-RH Map11569.2UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1950 465 2270 7305 6471 53 3734 1 852 1744 1617 174 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001301779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001301780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001301819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_003455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005271659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005271660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005271661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005271664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006718901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024448682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047427564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF027218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF027219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF155101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ276177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ276178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ276179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ276180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ276181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ276182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK226047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL162031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP000868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC113104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA770117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ093962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU332869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  H89560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  H89561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY056142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000336139   ⟹   ENSP00000337724
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11123,724,177 - 123,741,670 (-)Ensembl
Ensembl Acc Id: ENST00000525391
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11123,738,624 - 123,741,665 (-)Ensembl
Ensembl Acc Id: ENST00000526252   ⟹   ENSP00000434338
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11123,730,858 - 123,741,614 (-)Ensembl
Ensembl Acc Id: ENST00000528306   ⟹   ENSP00000431761
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11123,730,752 - 123,741,673 (-)Ensembl
Ensembl Acc Id: ENST00000529250
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11123,730,808 - 123,741,675 (-)Ensembl
Ensembl Acc Id: ENST00000529691   ⟹   ENSP00000433881
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11123,724,780 - 123,741,671 (-)Ensembl
Ensembl Acc Id: ENST00000530393   ⟹   ENSP00000432504
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11123,723,914 - 123,741,660 (-)Ensembl
Ensembl Acc Id: ENST00000530944
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11123,730,860 - 123,741,660 (-)Ensembl
Ensembl Acc Id: ENST00000533463   ⟹   ENSP00000431223
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11123,730,510 - 123,741,667 (-)Ensembl
RefSeq Acc Id: NM_001301779   ⟹   NP_001288708
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811123,723,914 - 123,741,660 (-)NCBI
CHM1_111123,481,069 - 123,498,822 (-)NCBI
T2T-CHM13v2.011123,752,703 - 123,770,446 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001301780   ⟹   NP_001288709
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811123,723,914 - 123,741,660 (-)NCBI
CHM1_111123,481,069 - 123,498,822 (-)NCBI
T2T-CHM13v2.011123,752,703 - 123,770,446 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001301819   ⟹   NP_001288748
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811123,723,927 - 123,730,985 (-)NCBI
CHM1_111123,481,069 - 123,488,116 (-)NCBI
T2T-CHM13v2.011123,752,716 - 123,759,763 (-)NCBI
Sequence:
RefSeq Acc Id: NM_003455   ⟹   NP_003446
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811123,723,914 - 123,741,660 (-)NCBI
GRCh3711123,594,997 - 123,612,383 (-)NCBI
Build 3611123,100,207 - 123,117,573 (-)NCBI Archive
HuRef11119,536,108 - 119,553,476 (-)ENTREZGENE
CHM1_111123,481,069 - 123,498,822 (-)NCBI
T2T-CHM13v2.011123,752,703 - 123,770,446 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005271659   ⟹   XP_005271716
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811123,723,914 - 123,741,660 (-)NCBI
GRCh3711123,594,997 - 123,612,383 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005271660   ⟹   XP_005271717
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811123,723,914 - 123,741,660 (-)NCBI
GRCh3711123,594,997 - 123,612,383 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005271661   ⟹   XP_005271718
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811123,723,914 - 123,741,660 (-)NCBI
GRCh3711123,594,997 - 123,612,383 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006718901   ⟹   XP_006718964
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811123,723,914 - 123,741,660 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011542972   ⟹   XP_011541274
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811123,723,914 - 123,741,660 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011542973   ⟹   XP_011541275
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811123,723,914 - 123,741,660 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011542975   ⟹   XP_011541277
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811123,723,914 - 123,741,660 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017018268   ⟹   XP_016873757
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811123,723,914 - 123,741,660 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047427564   ⟹   XP_047283520
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811123,723,914 - 123,741,460 (-)NCBI
RefSeq Acc Id: XM_054369891   ⟹   XP_054225866
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.011123,752,703 - 123,770,446 (-)NCBI
RefSeq Acc Id: XM_054369892   ⟹   XP_054225867
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.011123,752,703 - 123,770,446 (-)NCBI
RefSeq Acc Id: XM_054369893   ⟹   XP_054225868
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.011123,752,703 - 123,770,446 (-)NCBI
RefSeq Acc Id: XM_054369894   ⟹   XP_054225869
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.011123,752,703 - 123,770,246 (-)NCBI
RefSeq Acc Id: XM_054369895   ⟹   XP_054225870
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.011123,752,703 - 123,770,446 (-)NCBI
RefSeq Acc Id: XM_054369896   ⟹   XP_054225871
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.011123,752,703 - 123,770,446 (-)NCBI
RefSeq Acc Id: XM_054369897   ⟹   XP_054225872
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.011123,752,703 - 123,770,446 (-)NCBI
RefSeq Acc Id: XM_054369898   ⟹   XP_054225873
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.011123,752,703 - 123,770,446 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001288708 (Get FASTA)   NCBI Sequence Viewer  
  NP_001288709 (Get FASTA)   NCBI Sequence Viewer  
  NP_001288748 (Get FASTA)   NCBI Sequence Viewer  
  NP_003446 (Get FASTA)   NCBI Sequence Viewer  
  XP_005271716 (Get FASTA)   NCBI Sequence Viewer  
  XP_005271717 (Get FASTA)   NCBI Sequence Viewer  
  XP_005271718 (Get FASTA)   NCBI Sequence Viewer  
  XP_006718964 (Get FASTA)   NCBI Sequence Viewer  
  XP_011541274 (Get FASTA)   NCBI Sequence Viewer  
  XP_011541275 (Get FASTA)   NCBI Sequence Viewer  
  XP_011541277 (Get FASTA)   NCBI Sequence Viewer  
  XP_016873757 (Get FASTA)   NCBI Sequence Viewer  
  XP_047283520 (Get FASTA)   NCBI Sequence Viewer  
  XP_054225866 (Get FASTA)   NCBI Sequence Viewer  
  XP_054225867 (Get FASTA)   NCBI Sequence Viewer  
  XP_054225868 (Get FASTA)   NCBI Sequence Viewer  
  XP_054225869 (Get FASTA)   NCBI Sequence Viewer  
  XP_054225870 (Get FASTA)   NCBI Sequence Viewer  
  XP_054225871 (Get FASTA)   NCBI Sequence Viewer  
  XP_054225872 (Get FASTA)   NCBI Sequence Viewer  
  XP_054225873 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC79940 (Get FASTA)   NCBI Sequence Viewer  
  AAC79941 (Get FASTA)   NCBI Sequence Viewer  
  AAD42867 (Get FASTA)   NCBI Sequence Viewer  
  AAH13382 (Get FASTA)   NCBI Sequence Viewer  
  AAY88738 (Get FASTA)   NCBI Sequence Viewer  
  ABY87558 (Get FASTA)   NCBI Sequence Viewer  
  BAG51223 (Get FASTA)   NCBI Sequence Viewer  
  CAB82384 (Get FASTA)   NCBI Sequence Viewer  
  CAC21447 (Get FASTA)   NCBI Sequence Viewer  
  EAW67553 (Get FASTA)   NCBI Sequence Viewer  
  EAW67554 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000337724
  ENSP00000337724.4
  ENSP00000431223.1
  ENSP00000431761.1
  ENSP00000432504
  ENSP00000432504.1
  ENSP00000433881
  ENSP00000433881.1
  ENSP00000434338.1
GenBank Protein O95125 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_003446   ⟸   NM_003455
- Peptide Label: isoform 1
- UniProtKB: Q9H1B9 (UniProtKB/Swiss-Prot),   Q4JG21 (UniProtKB/Swiss-Prot),   B0LPH9 (UniProtKB/Swiss-Prot),   Q9NSM4 (UniProtKB/Swiss-Prot),   O95125 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005271716   ⟸   XM_005271659
- Peptide Label: isoform X1
- UniProtKB: Q9H1B9 (UniProtKB/Swiss-Prot),   Q4JG21 (UniProtKB/Swiss-Prot),   B0LPH9 (UniProtKB/Swiss-Prot),   Q9NSM4 (UniProtKB/Swiss-Prot),   O95125 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005271718   ⟸   XM_005271661
- Peptide Label: isoform X1
- UniProtKB: Q9H1B9 (UniProtKB/Swiss-Prot),   Q4JG21 (UniProtKB/Swiss-Prot),   B0LPH9 (UniProtKB/Swiss-Prot),   Q9NSM4 (UniProtKB/Swiss-Prot),   O95125 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005271717   ⟸   XM_005271660
- Peptide Label: isoform X1
- UniProtKB: Q9H1B9 (UniProtKB/Swiss-Prot),   Q4JG21 (UniProtKB/Swiss-Prot),   B0LPH9 (UniProtKB/Swiss-Prot),   Q9NSM4 (UniProtKB/Swiss-Prot),   O95125 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006718964   ⟸   XM_006718901
- Peptide Label: isoform X1
- UniProtKB: Q9H1B9 (UniProtKB/Swiss-Prot),   Q4JG21 (UniProtKB/Swiss-Prot),   B0LPH9 (UniProtKB/Swiss-Prot),   Q9NSM4 (UniProtKB/Swiss-Prot),   O95125 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001288709   ⟸   NM_001301780
- Peptide Label: isoform 1
- UniProtKB: Q9H1B9 (UniProtKB/Swiss-Prot),   Q4JG21 (UniProtKB/Swiss-Prot),   B0LPH9 (UniProtKB/Swiss-Prot),   Q9NSM4 (UniProtKB/Swiss-Prot),   O95125 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001288708   ⟸   NM_001301779
- Peptide Label: isoform 1
- UniProtKB: Q9H1B9 (UniProtKB/Swiss-Prot),   Q4JG21 (UniProtKB/Swiss-Prot),   B0LPH9 (UniProtKB/Swiss-Prot),   Q9NSM4 (UniProtKB/Swiss-Prot),   O95125 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001288748   ⟸   NM_001301819
- Peptide Label: isoform 2
- UniProtKB: O95125 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011541274   ⟸   XM_011542972
- Peptide Label: isoform X1
- UniProtKB: Q9H1B9 (UniProtKB/Swiss-Prot),   Q4JG21 (UniProtKB/Swiss-Prot),   B0LPH9 (UniProtKB/Swiss-Prot),   Q9NSM4 (UniProtKB/Swiss-Prot),   O95125 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011541277   ⟸   XM_011542975
- Peptide Label: isoform X1
- UniProtKB: Q9H1B9 (UniProtKB/Swiss-Prot),   Q4JG21 (UniProtKB/Swiss-Prot),   B0LPH9 (UniProtKB/Swiss-Prot),   Q9NSM4 (UniProtKB/Swiss-Prot),   O95125 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011541275   ⟸   XM_011542973
- Peptide Label: isoform X1
- UniProtKB: Q9H1B9 (UniProtKB/Swiss-Prot),   Q4JG21 (UniProtKB/Swiss-Prot),   B0LPH9 (UniProtKB/Swiss-Prot),   Q9NSM4 (UniProtKB/Swiss-Prot),   O95125 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016873757   ⟸   XM_017018268
- Peptide Label: isoform X1
- UniProtKB: Q9H1B9 (UniProtKB/Swiss-Prot),   Q4JG21 (UniProtKB/Swiss-Prot),   B0LPH9 (UniProtKB/Swiss-Prot),   Q9NSM4 (UniProtKB/Swiss-Prot),   O95125 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000432504   ⟸   ENST00000530393
Ensembl Acc Id: ENSP00000337724   ⟸   ENST00000336139
Ensembl Acc Id: ENSP00000431223   ⟸   ENST00000533463
Ensembl Acc Id: ENSP00000434338   ⟸   ENST00000526252
Ensembl Acc Id: ENSP00000431761   ⟸   ENST00000528306
Ensembl Acc Id: ENSP00000433881   ⟸   ENST00000529691
RefSeq Acc Id: XP_047283520   ⟸   XM_047427564
- Peptide Label: isoform X1
- UniProtKB: Q9H1B9 (UniProtKB/Swiss-Prot),   Q4JG21 (UniProtKB/Swiss-Prot),   O95125 (UniProtKB/Swiss-Prot),   B0LPH9 (UniProtKB/Swiss-Prot),   Q9NSM4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054225868   ⟸   XM_054369893
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054225867   ⟸   XM_054369892
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054225870   ⟸   XM_054369895
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054225871   ⟸   XM_054369896
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054225873   ⟸   XM_054369898
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054225866   ⟸   XM_054369891
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054225872   ⟸   XM_054369897
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054225869   ⟸   XM_054369894
- Peptide Label: isoform X1
Protein Domains
C2H2-type   KRAB   SCAN box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O95125-F1-model_v2 AlphaFold O95125 1-648 view protein structure

Promoters
RGD ID:6789605
Promoter ID:HG_KWN:14456
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_003455,   UC001PZE.1,   UC001PZF.1
Position:
Human AssemblyChrPosition (strand)Source
Build 3611123,117,341 - 123,117,841 (-)MPROMDB
RGD ID:7222483
Promoter ID:EPDNEW_H16987
Type:initiation region
Name:ZNF202_1
Description:zinc finger protein 202
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811123,741,660 - 123,741,720EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:12994 AgrOrtholog
COSMIC ZNF202 COSMIC
Ensembl Genes ENSG00000166261 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000336139 ENTREZGENE
  ENST00000336139.8 UniProtKB/Swiss-Prot
  ENST00000526252.5 UniProtKB/TrEMBL
  ENST00000528306.5 UniProtKB/TrEMBL
  ENST00000529691 ENTREZGENE
  ENST00000529691.1 UniProtKB/Swiss-Prot
  ENST00000530393 ENTREZGENE
  ENST00000530393.6 UniProtKB/Swiss-Prot
  ENST00000533463.5 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.140.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000166261 GTEx
HGNC ID HGNC:12994 ENTREZGENE
Human Proteome Map ZNF202 Human Proteome Map
InterPro KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Krueppel_C2H2_ZnF UniProtKB/Swiss-Prot
  SCAN-C2H2_zinc_finger UniProtKB/TrEMBL
  SCAN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:7753 UniProtKB/Swiss-Prot
NCBI Gene 7753 ENTREZGENE
OMIM 603430 OMIM
PANTHER GASTRULA ZINC FINGER PROTEIN XLCGF26.1-LIKE-RELATED UniProtKB/TrEMBL
  KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/Swiss-Prot
  KRAB DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot
  PROTEIN ZBED8-RELATED UniProtKB/TrEMBL
  SCAN DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN-CONTAINING UniProtKB/TrEMBL
Pfam KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA37574 PharmGKB
PROSITE KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN_BOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF109640 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1D5RMT9_HUMAN UniProtKB/TrEMBL
  B0LPH9 ENTREZGENE
  B3KN61_HUMAN UniProtKB/TrEMBL
  E9PJL4_HUMAN UniProtKB/TrEMBL
  E9PM99_HUMAN UniProtKB/TrEMBL
  O95125 ENTREZGENE
  Q4JG21 ENTREZGENE
  Q9H1B9 ENTREZGENE
  Q9NSM4 ENTREZGENE
  ZN202_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B0LPH9 UniProtKB/Swiss-Prot
  Q4JG21 UniProtKB/Swiss-Prot
  Q9H1B9 UniProtKB/Swiss-Prot
  Q9NSM4 UniProtKB/Swiss-Prot