KRT17P2 (keratin 17 pseudogene 2) - Rat Genome Database

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Gene: KRT17P2 (keratin 17 pseudogene 2) Homo sapiens
Analyze
Symbol: KRT17P2
Name: keratin 17 pseudogene 2
RGD ID: 1352458
HGNC Page HGNC:6429
Description: INTERACTS WITH lipopolysaccharide; S-(1,2-dichlorovinyl)-L-cysteine; sodium arsenite
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
RGD Orthologs
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: KRT17  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381718,426,861 - 18,431,926 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1718,426,927 - 18,431,848 (+)EnsemblGRCh38hg38GRCh38
GRCh371718,330,175 - 18,335,240 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361718,270,866 - 18,275,053 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map17p11.2NCBI
HuRef1716,500,802 - 16,502,295 (-)NCBIHuRef
CHM1_11718,339,088 - 18,343,062 (+)NCBICHM1_1
T2T-CHM13v2.01718,373,692 - 18,378,757 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:1281771   PMID:11997339  


Genomics

Comparative Map Data
KRT17P2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381718,426,861 - 18,431,926 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1718,426,927 - 18,431,848 (+)EnsemblGRCh38hg38GRCh38
GRCh371718,330,175 - 18,335,240 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361718,270,866 - 18,275,053 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map17p11.2NCBI
HuRef1716,500,802 - 16,502,295 (-)NCBIHuRef
CHM1_11718,339,088 - 18,343,062 (+)NCBICHM1_1
T2T-CHM13v2.01718,373,692 - 18,378,757 (+)NCBIT2T-CHM13v2.0
KRT42
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1921,143,037 - 21,154,445 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha920,604,465 - 20,615,951 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0921,863,573 - 21,875,077 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl921,856,556 - 21,975,058 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1920,649,610 - 20,661,105 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0920,915,622 - 20,927,110 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0921,019,397 - 21,030,905 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1121
Count of miRNA genes:546
Interacting mature miRNAs:601
Transcripts:ENST00000300992, ENST00000326333, ENST00000581146, ENST00000584769
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298406BP16_HBlood pressure QTL 16 (human)0.0004Blood pressurehypertension susceptibility171477864740778647Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
428 831 1561 825 3597 651 985 257 773 108 1598 2707 2511 24 2463 435 1091 668 160

Sequence


Ensembl Acc Id: ENST00000300992
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1718,426,927 - 18,431,848 (+)Ensembl
Ensembl Acc Id: ENST00000326333
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1718,426,861 - 18,430,627 (+)Ensembl
Ensembl Acc Id: ENST00000581146
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1718,430,227 - 18,431,222 (+)Ensembl
Ensembl Acc Id: ENST00000584769
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1718,428,172 - 18,430,624 (+)Ensembl
RefSeq Acc Id: NR_146075
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381718,426,861 - 18,431,926 (+)NCBI
T2T-CHM13v2.01718,373,692 - 18,378,757 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAG58887 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
COSMIC KRT17P2 COSMIC
Ensembl Genes ENSG00000186831 Ensembl
GTEx ENSG00000186831 GTEx
HGNC ID HGNC:6429 ENTREZGENE
Human Proteome Map KRT17P2 Human Proteome Map
NCBI Gene KRT17P2 ENTREZGENE
PharmGKB PA30216 PharmGKB