GAPDHP16 (glyceraldehyde-3-phosphate dehydrogenase pseudogene 16) - Rat Genome Database

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Gene: GAPDHP16 (glyceraldehyde-3-phosphate dehydrogenase pseudogene 16) Homo sapiens
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Symbol: GAPDHP16
Name: glyceraldehyde-3-phosphate dehydrogenase pseudogene 16
RGD ID: 1351448
HGNC Page HGNC:23768
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: GAPDP16
Related Functional Gene: GAPDH  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382114,774,303 - 14,775,480 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2114,774,301 - 14,775,262 (+)EnsemblGRCh38hg38GRCh38
GRCh372116,146,624 - 16,147,801 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera211,316,358 - 1,317,535 (+)NCBICelera
Cytogenetic Map21q11.2NCBI
HuRef211,529,393 - 1,530,570 (+)NCBIHuRef
CHM1_12115,707,243 - 15,708,420 (+)NCBICHM1_1
T2T-CHM13v2.02113,129,536 - 13,130,713 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:198
Count of miRNA genes:190
Interacting mature miRNAs:195
Transcripts:ENST00000448152
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
668 861 663 487 1736 712 741 1 250 273 197 671 1873 1930 1 1567 267 631 423 53

Sequence


Ensembl Acc Id: ENST00000448152
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2114,774,301 - 14,775,262 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC GAPDHP16 COSMIC
Ensembl Genes ENSG00000225502 Ensembl, ENTREZGENE
GTEx ENSG00000225502 GTEx
HGNC ID HGNC:23768 ENTREZGENE
Human Proteome Map GAPDHP16 Human Proteome Map
NCBI Gene 387491 ENTREZGENE
PharmGKB PA134952318 PharmGKB