CASKIN2 (CASK interacting protein 2) - Rat Genome Database

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Gene: CASKIN2 (CASK interacting protein 2) Homo sapiens
Analyze
Symbol: CASKIN2
Name: CASK interacting protein 2
RGD ID: 1320238
HGNC Page HGNC:18200
Description: Predicted to be located in cytoplasm.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: ANKS5B; CASK-interacting protein 2; caskin-2; FLJ21609; KIAA1139
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,500,261 - 75,515,537 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,500,261 - 75,515,537 (-)EnsemblGRCh38hg38GRCh38
GRCh371773,496,342 - 73,511,618 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361771,007,937 - 71,023,222 (-)NCBINCBI36Build 36hg18NCBI36
Build 341771,007,936 - 71,023,222NCBI
Celera1770,090,213 - 70,105,647 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,919,898 - 68,935,321 (-)NCBIHuRef
CHM1_11773,561,385 - 73,576,701 (-)NCBICHM1_1
T2T-CHM13v2.01776,393,591 - 76,408,903 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISS)

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. CASK participates in alternative tripartite complexes in which Mint 1 competes for binding with caskin 1, a novel CASK-binding protein. Tabuchi K, etal., J Neurosci 2002 Jun 1;22(11):4264-73.
Additional References at PubMed
PMID:10574461   PMID:12477932   PMID:15489334   PMID:15592455   PMID:16094384   PMID:16344560   PMID:17081983   PMID:19531213   PMID:21805519   PMID:21873635   PMID:25468996   PMID:26186194  
PMID:26972000   PMID:27619958   PMID:27880917   PMID:28514442   PMID:28986522   PMID:29507755   PMID:29509190   PMID:29778605   PMID:30639242   PMID:31871319   PMID:33957083   PMID:33961781  
PMID:34079125   PMID:34316702   PMID:34702444   PMID:35384245   PMID:36215168   PMID:36543142   PMID:36931259   PMID:37468549   PMID:38117590   PMID:38587458   PMID:38777146  


Genomics

Comparative Map Data
CASKIN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,500,261 - 75,515,537 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,500,261 - 75,515,537 (-)EnsemblGRCh38hg38GRCh38
GRCh371773,496,342 - 73,511,618 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361771,007,937 - 71,023,222 (-)NCBINCBI36Build 36hg18NCBI36
Build 341771,007,936 - 71,023,222NCBI
Celera1770,090,213 - 70,105,647 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,919,898 - 68,935,321 (-)NCBIHuRef
CHM1_11773,561,385 - 73,576,701 (-)NCBICHM1_1
T2T-CHM13v2.01776,393,591 - 76,408,903 (-)NCBIT2T-CHM13v2.0
Caskin2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,689,813 - 115,704,517 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,690,009 - 115,704,465 (-)EnsemblGRCm39 Ensembl
GRCm3811115,798,987 - 115,813,658 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,799,183 - 115,813,639 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711115,660,666 - 115,674,906 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,615,442 - 115,629,682 (-)NCBIMGSCv36mm8
Celera11127,559,867 - 127,574,108 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.91NCBI
Caskin2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,526,131 - 101,540,362 (-)NCBIGRCr8
mRatBN7.210101,027,196 - 101,041,429 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,027,260 - 101,041,414 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10106,089,068 - 106,103,229 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010105,552,151 - 105,566,312 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010100,948,219 - 100,962,373 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010104,344,035 - 104,358,256 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,344,099 - 104,358,253 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010103,927,765 - 103,941,988 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,901,164 - 105,915,318 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110105,915,603 - 105,928,890 (-)NCBI
Celera1099,602,273 - 99,616,427 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Caskin2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555532,353,767 - 2,367,352 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555532,353,767 - 2,367,357 (-)NCBIChiLan1.0ChiLan1.0
CASKIN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,543,123 - 91,558,672 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11796,365,471 - 96,380,947 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01769,449,908 - 69,465,387 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11775,000,777 - 75,016,002 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1775,001,600 - 75,014,279 (-)Ensemblpanpan1.1panPan2
CASKIN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,008,645 - 5,031,647 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,010,833 - 5,031,871 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,688,103 - 5,711,217 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,678,880 - 5,702,001 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,687,865 - 5,701,983 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,718,009 - 5,741,103 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.095,828,179 - 5,851,253 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,889,259 - 5,912,363 (+)NCBIUU_Cfam_GSD_1.0
Caskin2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,668,482 - 5,682,056 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936594726,692 - 743,514 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936594729,903 - 743,433 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CASKIN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,855,968 - 5,870,554 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,855,874 - 5,870,327 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CASKIN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,162,457 - 46,178,430 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,164,117 - 46,177,606 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607716,927,966 - 16,943,997 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Caskin2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248015,306,404 - 5,320,232 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248015,306,404 - 5,320,333 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CASKIN2
132 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17q24.3-25.3(chr17:69209079-83086677)x3 copy number gain See cases [RCV000052486] Chr17:69209079..83086677 [GRCh38]
Chr17:67205220..81044553 [GRCh37]
Chr17:64716815..78637842 [NCBI36]
Chr17:17q24.3-25.3
pathogenic
GRCh38/hg38 17q23.2-25.3(chr17:36449220-83086677)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|See cases [RCV000052483] Chr17:36449220..83086677 [GRCh38]
Chr17:58617905..81044553 [GRCh37]
Chr17:55972687..78637842 [NCBI36]
Chr17:17q23.2-25.3
pathogenic
GRCh38/hg38 17q24.3-25.3(chr17:69916435-83102552)x3 copy number gain See cases [RCV000143342] Chr17:69916435..83102552 [GRCh38]
Chr17:67912576..81048189 [GRCh37]
Chr17:65424171..78653717 [NCBI36]
Chr17:17q24.3-25.3
pathogenic
GRCh37/hg19 17q24.2-25.3(chr17:64241326-81041938)x3 copy number gain See cases [RCV000447577] Chr17:64241326..81041938 [GRCh37]
Chr17:17q24.2-25.3
pathogenic
GRCh37/hg19 17q21.31-25.3(chr17:42580684-81085615)x3 copy number gain See cases [RCV000447823] Chr17:42580684..81085615 [GRCh37]
Chr17:17q21.31-25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
NM_020753.5(CASKIN2):c.1923G>C (p.Lys641Asn) single nucleotide variant not specified [RCV004316310] Chr17:75503151 [GRCh38]
Chr17:73499232 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1753G>A (p.Asp585Asn) single nucleotide variant not specified [RCV004296913] Chr17:75503455 [GRCh38]
Chr17:73499536 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1477G>A (p.Ala493Thr) single nucleotide variant not specified [RCV004319019] Chr17:75503953 [GRCh38]
Chr17:73500034 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2387G>A (p.Arg796His) single nucleotide variant not specified [RCV004327961] Chr17:75502687 [GRCh38]
Chr17:73498768 [GRCh37]
Chr17:17q25.1
uncertain significance
GRCh37/hg19 17q25.1(chr17:72901452-73518861)x3 copy number gain not provided [RCV000585184] Chr17:72901452..73518861 [GRCh37]
Chr17:17q25.1
uncertain significance
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17q24.2-25.3(chr17:67002415-81041938)x3 copy number gain See cases [RCV000512573] Chr17:67002415..81041938 [GRCh37]
Chr17:17q24.2-25.3
pathogenic
GRCh37/hg19 17q25.1(chr17:73414856-74037715)x3 copy number gain not provided [RCV000683962] Chr17:73414856..74037715 [GRCh37]
Chr17:17q25.1
uncertain significance
GRCh37/hg19 17q24.1-25.3(chr17:63689671-81041938)x3 copy number gain not provided [RCV000683952] Chr17:63689671..81041938 [GRCh37]
Chr17:17q24.1-25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17q25.1(chr17:73495025-73500739)x1 copy number loss not provided [RCV000739671] Chr17:73495025..73500739 [GRCh37]
Chr17:17q25.1
benign
GRCh37/hg19 17q24.1-25.2(chr17:64159738-74891024)x3 copy number gain not provided [RCV000762750] Chr17:64159738..74891024 [GRCh37]
Chr17:17q24.1-25.2
likely pathogenic
NM_020753.5(CASKIN2):c.2714G>A (p.Arg905Gln) single nucleotide variant not specified [RCV004294020] Chr17:75502360 [GRCh38]
Chr17:73498441 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1295T>G (p.Leu432Arg) single nucleotide variant not specified [RCV004322428] Chr17:75504591 [GRCh38]
Chr17:73500672 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1467+8C>A single nucleotide variant not provided [RCV000950004] Chr17:75504207 [GRCh38]
Chr17:73500288 [GRCh37]
Chr17:17q25.1
benign
NM_020753.5(CASKIN2):c.1187G>A (p.Ser396Asn) single nucleotide variant not specified [RCV004309654] Chr17:75504817 [GRCh38]
Chr17:73500898 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2786C>T (p.Thr929Met) single nucleotide variant not specified [RCV004304306] Chr17:75502288 [GRCh38]
Chr17:73498369 [GRCh37]
Chr17:17q25.1
uncertain significance
GRCh37/hg19 17q24.1-25.3(chr17:62778720-81041938)x3 copy number gain not provided [RCV000849900] Chr17:62778720..81041938 [GRCh37]
Chr17:17q24.1-25.3
pathogenic
GRCh37/hg19 17q25.1(chr17:73413448-73568196)x1 copy number loss not provided [RCV000847285] Chr17:73413448..73568196 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3077C>T (p.Thr1026Ile) single nucleotide variant not specified [RCV004313638] Chr17:75501997 [GRCh38]
Chr17:73498078 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2554G>A (p.Gly852Arg) single nucleotide variant not specified [RCV004291737] Chr17:75502520 [GRCh38]
Chr17:73498601 [GRCh37]
Chr17:17q25.1
uncertain significance
GRCh37/hg19 17q25.1-25.3(chr17:73261871-78608763)x3 copy number gain not provided [RCV001006919] Chr17:73261871..78608763 [GRCh37]
Chr17:17q25.1-25.3
pathogenic
GRCh37/hg19 17q25.1(chr17:73049227-73533226) copy number loss not specified [RCV002052605] Chr17:73049227..73533226 [GRCh37]
Chr17:17q25.1
uncertain significance
NC_000017.10:g.(?_73204602)_(73515148_?)dup duplication not provided [RCV001888427] Chr17:73204602..73515148 [GRCh37]
Chr17:17q25.1
uncertain significance
GRCh37/hg19 17q25.1-25.3(chr17:73481509-81043199)x3 copy number gain not provided [RCV002276051] Chr17:73481509..81043199 [GRCh37]
Chr17:17q25.1-25.3
pathogenic
NM_020753.5(CASKIN2):c.2381C>T (p.Pro794Leu) single nucleotide variant not specified [RCV004327269] Chr17:75502693 [GRCh38]
Chr17:73498774 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3079C>T (p.Pro1027Ser) single nucleotide variant not specified [RCV004146745] Chr17:75501995 [GRCh38]
Chr17:73498076 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3260C>T (p.Ala1087Val) single nucleotide variant not specified [RCV004194479] Chr17:75501814 [GRCh38]
Chr17:73497895 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.31G>A (p.Val11Ile) single nucleotide variant not specified [RCV004086759] Chr17:75513774 [GRCh38]
Chr17:73509855 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.447G>C (p.Lys149Asn) single nucleotide variant not specified [RCV004117985] Chr17:75506838 [GRCh38]
Chr17:73502919 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1165C>T (p.Arg389Trp) single nucleotide variant not specified [RCV004124867] Chr17:75504839 [GRCh38]
Chr17:73500920 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2935G>A (p.Gly979Ser) single nucleotide variant not specified [RCV004191668] Chr17:75502139 [GRCh38]
Chr17:73498220 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.534G>C (p.Glu178Asp) single nucleotide variant not specified [RCV004221690] Chr17:75506666 [GRCh38]
Chr17:73502747 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2950C>T (p.Leu984Phe) single nucleotide variant not specified [RCV004106344] Chr17:75502124 [GRCh38]
Chr17:73498205 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.883C>G (p.Leu295Val) single nucleotide variant not specified [RCV004218382] Chr17:75505604 [GRCh38]
Chr17:73501685 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.907G>A (p.Val303Ile) single nucleotide variant not specified [RCV004128962] Chr17:75505580 [GRCh38]
Chr17:73501661 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2080C>T (p.Arg694Cys) single nucleotide variant not specified [RCV004192918] Chr17:75502994 [GRCh38]
Chr17:73499075 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1945G>A (p.Glu649Lys) single nucleotide variant not specified [RCV004216483] Chr17:75503129 [GRCh38]
Chr17:73499210 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2494C>T (p.Arg832Trp) single nucleotide variant not specified [RCV004210457] Chr17:75502580 [GRCh38]
Chr17:73498661 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.142G>A (p.Asp48Asn) single nucleotide variant not specified [RCV004093404] Chr17:75508238 [GRCh38]
Chr17:73504319 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.238A>G (p.Ser80Gly) single nucleotide variant not specified [RCV004150533] Chr17:75507590 [GRCh38]
Chr17:73503671 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1442G>A (p.Arg481Gln) single nucleotide variant not specified [RCV004114093] Chr17:75504240 [GRCh38]
Chr17:73500321 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3317C>T (p.Ser1106Leu) single nucleotide variant not specified [RCV004143650] Chr17:75501669 [GRCh38]
Chr17:73497750 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3262G>A (p.Ala1088Thr) single nucleotide variant not specified [RCV004197172] Chr17:75501812 [GRCh38]
Chr17:73497893 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.863C>T (p.Ala288Val) single nucleotide variant not specified [RCV004230032] Chr17:75505624 [GRCh38]
Chr17:73501705 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2111G>A (p.Arg704His) single nucleotide variant not specified [RCV004163912] Chr17:75502963 [GRCh38]
Chr17:73499044 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2899G>A (p.Ala967Thr) single nucleotide variant not specified [RCV004247165] Chr17:75502175 [GRCh38]
Chr17:73498256 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.581A>G (p.His194Arg) single nucleotide variant not specified [RCV004175580] Chr17:75506619 [GRCh38]
Chr17:73502700 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1744A>G (p.Ser582Gly) single nucleotide variant not specified [RCV004131882] Chr17:75503464 [GRCh38]
Chr17:73499545 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2651C>T (p.Pro884Leu) single nucleotide variant not specified [RCV004088719] Chr17:75502423 [GRCh38]
Chr17:73498504 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2590C>T (p.Arg864Trp) single nucleotide variant not specified [RCV004097088] Chr17:75502484 [GRCh38]
Chr17:73498565 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3359C>T (p.Ala1120Val) single nucleotide variant not specified [RCV004153364] Chr17:75501627 [GRCh38]
Chr17:73497708 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2180C>A (p.Pro727His) single nucleotide variant not specified [RCV004234953] Chr17:75502894 [GRCh38]
Chr17:73498975 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2504G>A (p.Arg835His) single nucleotide variant not specified [RCV004226834] Chr17:75502570 [GRCh38]
Chr17:73498651 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1910G>A (p.Arg637His) single nucleotide variant not specified [RCV004163945] Chr17:75503164 [GRCh38]
Chr17:73499245 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3118G>A (p.Glu1040Lys) single nucleotide variant not specified [RCV004069150] Chr17:75501956 [GRCh38]
Chr17:73498037 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1409G>A (p.Arg470His) single nucleotide variant not specified [RCV004074925] Chr17:75504273 [GRCh38]
Chr17:73500354 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2669A>T (p.Asp890Val) single nucleotide variant not specified [RCV004098284] Chr17:75502405 [GRCh38]
Chr17:73498486 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2827C>T (p.Arg943Trp) single nucleotide variant not specified [RCV004208839] Chr17:75502247 [GRCh38]
Chr17:73498328 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3595G>T (p.Ala1199Ser) single nucleotide variant not specified [RCV004157971] Chr17:75501094 [GRCh38]
Chr17:73497175 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2005G>A (p.Gly669Ser) single nucleotide variant not specified [RCV004155683] Chr17:75503069 [GRCh38]
Chr17:73499150 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3013G>A (p.Ala1005Thr) single nucleotide variant not specified [RCV004159880] Chr17:75502061 [GRCh38]
Chr17:73498142 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3077C>A (p.Thr1026Asn) single nucleotide variant not specified [RCV004078333] Chr17:75501997 [GRCh38]
Chr17:73498078 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2263G>A (p.Val755Ile) single nucleotide variant not specified [RCV004214749] Chr17:75502811 [GRCh38]
Chr17:73498892 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1921A>G (p.Lys641Glu) single nucleotide variant not specified [RCV004117687] Chr17:75503153 [GRCh38]
Chr17:73499234 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1112C>G (p.Pro371Arg) single nucleotide variant not specified [RCV004198684] Chr17:75504892 [GRCh38]
Chr17:73500973 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1892C>T (p.Ala631Val) single nucleotide variant not specified [RCV004163583] Chr17:75503182 [GRCh38]
Chr17:73499263 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2594G>A (p.Arg865His) single nucleotide variant not specified [RCV004095510] Chr17:75502480 [GRCh38]
Chr17:73498561 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2101A>T (p.Ile701Phe) single nucleotide variant not specified [RCV004231683] Chr17:75502973 [GRCh38]
Chr17:73499054 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2663C>G (p.Pro888Arg) single nucleotide variant not specified [RCV004099532] Chr17:75502411 [GRCh38]
Chr17:73498492 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2519G>A (p.Arg840Gln) single nucleotide variant not specified [RCV004097813] Chr17:75502555 [GRCh38]
Chr17:73498636 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3043A>G (p.Thr1015Ala) single nucleotide variant not specified [RCV004215842] Chr17:75502031 [GRCh38]
Chr17:73498112 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1064G>A (p.Arg355His) single nucleotide variant not specified [RCV004205877] Chr17:75504940 [GRCh38]
Chr17:73501021 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.382T>C (p.Tyr128His) single nucleotide variant not specified [RCV004171000] Chr17:75506992 [GRCh38]
Chr17:73503073 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1337A>G (p.Asp446Gly) single nucleotide variant not specified [RCV004177353] Chr17:75504458 [GRCh38]
Chr17:73500539 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3286C>T (p.Pro1096Ser) single nucleotide variant not specified [RCV004194018] Chr17:75501788 [GRCh38]
Chr17:73497869 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3257C>T (p.Pro1086Leu) single nucleotide variant not specified [RCV004123628] Chr17:75501817 [GRCh38]
Chr17:73497898 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3364C>T (p.Arg1122Trp) single nucleotide variant not specified [RCV004093707] Chr17:75501622 [GRCh38]
Chr17:73497703 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2824T>C (p.Ser942Pro) single nucleotide variant not specified [RCV004096169] Chr17:75502250 [GRCh38]
Chr17:73498331 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3565A>G (p.Met1189Val) single nucleotide variant not specified [RCV004086828] Chr17:75501124 [GRCh38]
Chr17:73497205 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1871G>A (p.Arg624Gln) single nucleotide variant not specified [RCV004131687] Chr17:75503203 [GRCh38]
Chr17:73499284 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.410A>G (p.His137Arg) single nucleotide variant not specified [RCV004285221] Chr17:75506875 [GRCh38]
Chr17:73502956 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2552G>A (p.Arg851Gln) single nucleotide variant not specified [RCV004250442] Chr17:75502522 [GRCh38]
Chr17:73498603 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2239C>A (p.Pro747Thr) single nucleotide variant not specified [RCV004272782] Chr17:75502835 [GRCh38]
Chr17:73498916 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.737A>G (p.Asp246Gly) single nucleotide variant not specified [RCV004264931] Chr17:75505919 [GRCh38]
Chr17:73502000 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2378G>A (p.Arg793Gln) single nucleotide variant not specified [RCV004330946] Chr17:75502696 [GRCh38]
Chr17:73498777 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2507G>A (p.Ser836Asn) single nucleotide variant not specified [RCV004278058] Chr17:75502567 [GRCh38]
Chr17:73498648 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1831A>C (p.Lys611Gln) single nucleotide variant not specified [RCV004283136] Chr17:75503243 [GRCh38]
Chr17:73499324 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2402T>A (p.Leu801Gln) single nucleotide variant not specified [RCV004278813] Chr17:75502672 [GRCh38]
Chr17:73498753 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2297C>T (p.Pro766Leu) single nucleotide variant not specified [RCV004249391] Chr17:75502777 [GRCh38]
Chr17:73498858 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1408C>T (p.Arg470Cys) single nucleotide variant not specified [RCV004290994] Chr17:75504274 [GRCh38]
Chr17:73500355 [GRCh37]
Chr17:17q25.1
uncertain significance
GRCh37/hg19 17q25.1(chr17:72718277-74142256) copy number gain 7q11.23 microduplication syndrome [RCV003325440] Chr17:72718277..74142256 [GRCh37]
Chr17:17q25.1
pathogenic
NM_020753.5(CASKIN2):c.2537C>T (p.Thr846Ile) single nucleotide variant not specified [RCV004339450] Chr17:75502537 [GRCh38]
Chr17:73498618 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2212C>T (p.Arg738Trp) single nucleotide variant not specified [RCV004362254] Chr17:75502862 [GRCh38]
Chr17:73498943 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.649C>T (p.Arg217Cys) single nucleotide variant not specified [RCV004336953] Chr17:75506382 [GRCh38]
Chr17:73502463 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1987C>T (p.Arg663Trp) single nucleotide variant not specified [RCV004336262] Chr17:75503087 [GRCh38]
Chr17:73499168 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2563C>T (p.Arg855Cys) single nucleotide variant not specified [RCV004355130] Chr17:75502511 [GRCh38]
Chr17:73498592 [GRCh37]
Chr17:17q25.1
uncertain significance
GRCh37/hg19 17q25.1(chr17:73264158-74039659)x3 copy number gain not provided [RCV003485164] Chr17:73264158..74039659 [GRCh37]
Chr17:17q25.1
uncertain significance
GRCh37/hg19 17q25.1(chr17:73259444-73533226)x3 copy number gain not provided [RCV003485163] Chr17:73259444..73533226 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1468-4G>A single nucleotide variant not provided [RCV003413337] Chr17:75503966 [GRCh38]
Chr17:73500047 [GRCh37]
Chr17:17q25.1
likely benign
GRCh37/hg19 17q25.1(chr17:73281839-73568196)x1 copy number loss not specified [RCV003987262] Chr17:73281839..73568196 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1105C>T (p.Arg369Trp) single nucleotide variant not specified [RCV004427355] Chr17:75504899 [GRCh38]
Chr17:73500980 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1781C>A (p.Thr594Asn) single nucleotide variant not specified [RCV004427360] Chr17:75503427 [GRCh38]
Chr17:73499508 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1744A>T (p.Ser582Cys) single nucleotide variant not specified [RCV004427359] Chr17:75503464 [GRCh38]
Chr17:73499545 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1076C>T (p.Ala359Val) single nucleotide variant not specified [RCV004427354] Chr17:75504928 [GRCh38]
Chr17:73501009 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1364C>T (p.Pro455Leu) single nucleotide variant not specified [RCV004427356] Chr17:75504431 [GRCh38]
Chr17:73500512 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1654G>A (p.Ala552Thr) single nucleotide variant not specified [RCV004427358] Chr17:75503685 [GRCh38]
Chr17:73499766 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2767G>C (p.Ala923Pro) single nucleotide variant not specified [RCV004429853] Chr17:75502307 [GRCh38]
Chr17:73498388 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3169C>T (p.Pro1057Ser) single nucleotide variant not specified [RCV004429859] Chr17:75501905 [GRCh38]
Chr17:73497986 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3541C>T (p.His1181Tyr) single nucleotide variant not specified [RCV004429863] Chr17:75501148 [GRCh38]
Chr17:73497229 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.811C>T (p.Arg271Trp) single nucleotide variant not specified [RCV004429868] Chr17:75505845 [GRCh38]
Chr17:73501926 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2254C>T (p.Pro752Ser) single nucleotide variant not specified [RCV004429845] Chr17:75502820 [GRCh38]
Chr17:73498901 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2452C>T (p.Pro818Ser) single nucleotide variant not specified [RCV004429850] Chr17:75502622 [GRCh38]
Chr17:73498703 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3191C>T (p.Pro1064Leu) single nucleotide variant not specified [RCV004429860] Chr17:75501883 [GRCh38]
Chr17:73497964 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3260C>G (p.Ala1087Gly) single nucleotide variant not specified [RCV004429861] Chr17:75501814 [GRCh38]
Chr17:73497895 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.740T>C (p.Val247Ala) single nucleotide variant not specified [RCV004429866] Chr17:75505916 [GRCh38]
Chr17:73501997 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.749G>A (p.Arg250Gln) single nucleotide variant not specified [RCV004429867] Chr17:75505907 [GRCh38]
Chr17:73501988 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3091C>T (p.Pro1031Ser) single nucleotide variant not specified [RCV004429857] Chr17:75501983 [GRCh38]
Chr17:73498064 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.739G>A (p.Val247Met) single nucleotide variant not specified [RCV004429865] Chr17:75505917 [GRCh38]
Chr17:73501998 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1867C>T (p.Arg623Trp) single nucleotide variant not specified [RCV004429842] Chr17:75503207 [GRCh38]
Chr17:73499288 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2045G>A (p.Gly682Glu) single nucleotide variant not specified [RCV004429843] Chr17:75503029 [GRCh38]
Chr17:73499110 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2060C>G (p.Pro687Arg) single nucleotide variant not specified [RCV004429844] Chr17:75503014 [GRCh38]
Chr17:73499095 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.374A>T (p.Tyr125Phe) single nucleotide variant not specified [RCV004429864] Chr17:75507000 [GRCh38]
Chr17:73503081 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2963A>G (p.Asp988Gly) single nucleotide variant not specified [RCV004429854] Chr17:75502111 [GRCh38]
Chr17:73498192 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3079C>G (p.Pro1027Ala) single nucleotide variant not specified [RCV004429855] Chr17:75501995 [GRCh38]
Chr17:73498076 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2320G>A (p.Ala774Thr) single nucleotide variant not specified [RCV004429848] Chr17:75502754 [GRCh38]
Chr17:73498835 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2407C>T (p.Arg803Cys) single nucleotide variant not specified [RCV004429849] Chr17:75502667 [GRCh38]
Chr17:73498748 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2650C>T (p.Pro884Ser) single nucleotide variant not specified [RCV004429852] Chr17:75502424 [GRCh38]
Chr17:73498505 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.308G>A (p.Arg103His) single nucleotide variant not specified [RCV004429856] Chr17:75507066 [GRCh38]
Chr17:73503147 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3370G>A (p.Gly1124Ser) single nucleotide variant not specified [RCV004429862] Chr17:75501616 [GRCh38]
Chr17:73497697 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.832C>T (p.Arg278Trp) single nucleotide variant not specified [RCV004429869] Chr17:75505824 [GRCh38]
Chr17:73501905 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.3529G>A (p.Ala1177Thr) single nucleotide variant not specified [RCV004600978] Chr17:75501160 [GRCh38]
Chr17:73497241 [GRCh37]
Chr17:17q25.1
likely benign
NM_020753.5(CASKIN2):c.53G>T (p.Gly18Val) single nucleotide variant not specified [RCV004600986] Chr17:75513752 [GRCh38]
Chr17:73509833 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1091G>A (p.Arg364His) single nucleotide variant not specified [RCV004600975] Chr17:75504913 [GRCh38]
Chr17:73500994 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.905A>G (p.Asn302Ser) single nucleotide variant not specified [RCV004600981] Chr17:75505582 [GRCh38]
Chr17:73501663 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2975G>A (p.Arg992Gln) single nucleotide variant not specified [RCV004600973] Chr17:75502099 [GRCh38]
Chr17:73498180 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1906G>A (p.Gly636Arg) single nucleotide variant not specified [RCV004600974] Chr17:75503168 [GRCh38]
Chr17:73499249 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1016C>T (p.Pro339Leu) single nucleotide variant not specified [RCV004600977] Chr17:75504988 [GRCh38]
Chr17:73501069 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2776G>A (p.Ala926Thr) single nucleotide variant not specified [RCV004600982] Chr17:75502298 [GRCh38]
Chr17:73498379 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1549G>A (p.Val517Met) single nucleotide variant not specified [RCV004600983] Chr17:75503881 [GRCh38]
Chr17:73499962 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2833A>G (p.Ser945Gly) single nucleotide variant not specified [RCV004600987] Chr17:75502241 [GRCh38]
Chr17:73498322 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1108A>T (p.Thr370Ser) single nucleotide variant not specified [RCV004600988] Chr17:75504896 [GRCh38]
Chr17:73500977 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2906C>T (p.Pro969Leu) single nucleotide variant not specified [RCV004607336] Chr17:75502168 [GRCh38]
Chr17:73498249 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.563A>G (p.Asn188Ser) single nucleotide variant not specified [RCV004607338] Chr17:75506637 [GRCh38]
Chr17:73502718 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2693G>A (p.Gly898Glu) single nucleotide variant not specified [RCV004600980] Chr17:75502381 [GRCh38]
Chr17:73498462 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.7C>G (p.Arg3Gly) single nucleotide variant not specified [RCV004600984] Chr17:75513798 [GRCh38]
Chr17:73509879 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2179C>G (p.Pro727Ala) single nucleotide variant not specified [RCV004600976] Chr17:75502895 [GRCh38]
Chr17:73498976 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.1112C>T (p.Pro371Leu) single nucleotide variant not specified [RCV004600985] Chr17:75504892 [GRCh38]
Chr17:73500973 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_020753.5(CASKIN2):c.2842G>A (p.Glu948Lys) single nucleotide variant not specified [RCV004600979] Chr17:75502232 [GRCh38]
Chr17:73498313 [GRCh37]
Chr17:17q25.1
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2372
Count of miRNA genes:896
Interacting mature miRNAs:1090
Transcripts:ENST00000321617, ENST00000433559, ENST00000580021, ENST00000580075, ENST00000581870, ENST00000583246, ENST00000583258
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406947393GWAS596369_HPR interval QTL GWAS596369 (human)5e-08PR intervalPR interval (CMO:0000233)177550909175509092Human
597124315GWAS1220389_Hcalcium measurement QTL GWAS1220389 (human)3e-08calcium measurementblood calcium level (CMO:0000502)177550740875507409Human

Markers in Region
RH25408  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371773,495,937 - 73,496,038UniSTSGRCh37
Build 361771,007,532 - 71,007,633RGDNCBI36
Celera1770,089,808 - 70,089,909RGD
Cytogenetic Map17q25.1UniSTS
HuRef1768,919,494 - 68,919,595UniSTS
SHGC-148423  
Human AssemblyChrPosition (strand)SourceJBrowse
Celera1770,098,801 - 70,099,103RGD
Cytogenetic Map17q25.1UniSTS
TNG Radiation Hybrid Map1733609.0UniSTS
RH71445  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371773,495,944 - 73,496,083UniSTSGRCh37
Build 361771,007,539 - 71,007,678RGDNCBI36
Celera1770,089,815 - 70,089,954RGD
Cytogenetic Map17q25.1UniSTS
HuRef1768,919,501 - 68,919,640UniSTS
GeneMap99-GB4 RH Map17479.72UniSTS
NCBI RH Map17764.0UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2438 2788 2253 4972 1726 2351 5 624 1939 465 2269 7292 6459 52 3733 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_033152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001142643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_020753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054316745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB032965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC100787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF451976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK025262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM994645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA105579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA336467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA538297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC318119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000321617   ⟹   ENSP00000325355
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1775,500,261 - 75,515,537 (-)Ensembl
Ensembl Acc Id: ENST00000433559   ⟹   ENSP00000406963
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1775,500,809 - 75,509,888 (-)Ensembl
Ensembl Acc Id: ENST00000580021
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1775,503,090 - 75,503,940 (-)Ensembl
Ensembl Acc Id: ENST00000580075   ⟹   ENSP00000463211
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1775,513,728 - 75,515,260 (-)Ensembl
Ensembl Acc Id: ENST00000581870   ⟹   ENSP00000464300
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1775,505,319 - 75,515,440 (-)Ensembl
Ensembl Acc Id: ENST00000583246
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1775,506,743 - 75,507,635 (-)Ensembl
Ensembl Acc Id: ENST00000583258
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1775,506,667 - 75,507,851 (-)Ensembl
RefSeq Acc Id: NM_001142643   ⟹   NP_001136115
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381775,500,261 - 75,509,890 (-)NCBI
GRCh371773,496,341 - 73,511,664 (-)NCBI
Celera1770,090,213 - 70,105,647 (-)RGD
HuRef1768,919,898 - 68,935,321 (-)NCBI
CHM1_11773,561,385 - 73,571,013 (-)NCBI
T2T-CHM13v2.01776,393,591 - 76,403,262 (-)NCBI
Sequence:
RefSeq Acc Id: NM_020753   ⟹   NP_065804
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381775,500,261 - 75,515,537 (-)NCBI
GRCh371773,496,341 - 73,511,664 (-)NCBI
Build 361771,007,937 - 71,023,222 (-)NCBI Archive
Celera1770,090,213 - 70,105,647 (-)RGD
HuRef1768,919,898 - 68,935,321 (-)NCBI
CHM1_11773,561,385 - 73,576,701 (-)NCBI
T2T-CHM13v2.01776,393,591 - 76,408,903 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047436459   ⟹   XP_047292415
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381775,500,261 - 75,515,537 (-)NCBI
RefSeq Acc Id: XM_054316745   ⟹   XP_054172720
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01776,393,591 - 76,408,903 (-)NCBI
RefSeq Acc Id: NP_065804   ⟸   NM_020753
- Peptide Label: isoform a
- UniProtKB: Q8WXE0 (UniProtKB/Swiss-Prot),   Q7LG69 (UniProtKB/Swiss-Prot),   B7Z9H1 (UniProtKB/Swiss-Prot),   B4DTT3 (UniProtKB/Swiss-Prot),   Q9ULT1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001136115   ⟸   NM_001142643
- Peptide Label: isoform b
- UniProtKB: Q8WXE0 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000463211   ⟸   ENST00000580075
Ensembl Acc Id: ENSP00000464300   ⟸   ENST00000581870
Ensembl Acc Id: ENSP00000325355   ⟸   ENST00000321617
Ensembl Acc Id: ENSP00000406963   ⟸   ENST00000433559
RefSeq Acc Id: XP_047292415   ⟸   XM_047436459
- Peptide Label: isoform X1
- UniProtKB: Q8WXE0 (UniProtKB/Swiss-Prot),   Q7LG69 (UniProtKB/Swiss-Prot),   B7Z9H1 (UniProtKB/Swiss-Prot),   B4DTT3 (UniProtKB/Swiss-Prot),   Q9ULT1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054172720   ⟸   XM_054316745
- Peptide Label: isoform X1
Protein Domains
SAM   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8WXE0-F1-model_v2 AlphaFold Q8WXE0 1-1202 view protein structure

Promoters
RGD ID:6794256
Promoter ID:HG_KWN:27103
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid
Transcripts:UC002JOC.1,   UC002JOD.2
Position:
Human AssemblyChrPosition (strand)Source
Build 361771,023,061 - 71,024,197 (-)MPROMDB
RGD ID:7236301
Promoter ID:EPDNEW_H23896
Type:initiation region
Name:CASKIN2_1
Description:CASK interacting protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381775,515,537 - 75,515,597EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:18200 AgrOrtholog
COSMIC CASKIN2 COSMIC
Ensembl Genes ENSG00000177303 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000321617 ENTREZGENE
  ENST00000321617.8 UniProtKB/Swiss-Prot
  ENST00000433559 ENTREZGENE
  ENST00000433559.6 UniProtKB/Swiss-Prot
  ENST00000580075.1 UniProtKB/TrEMBL
  ENST00000581870.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot
  1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 Domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000177303 GTEx
HGNC ID HGNC:18200 ENTREZGENE
Human Proteome Map CASKIN2 Human Proteome Map
InterPro ANKS1/Caskin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Caskin1-CID UniProtKB/Swiss-Prot
  Caskin1/2_SAM_1 UniProtKB/Swiss-Prot
  Caskin1/2_SAM_2 UniProtKB/Swiss-Prot
  Caskin2_SH3 UniProtKB/Swiss-Prot
  Caskin_C UniProtKB/Swiss-Prot
  SAM UniProtKB/Swiss-Prot
  SAM/pointed_sf UniProtKB/Swiss-Prot
  SH3-like_dom_sf UniProtKB/Swiss-Prot
  SH3_domain UniProtKB/Swiss-Prot
KEGG Report hsa:57513 UniProtKB/Swiss-Prot
NCBI Gene 57513 ENTREZGENE
OMIM 612185 OMIM
PANTHER ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CASKIN-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_4 UniProtKB/TrEMBL
  Caskin-Pro-rich UniProtKB/Swiss-Prot
  Caskin-tail UniProtKB/Swiss-Prot
  Caskin1-CID UniProtKB/Swiss-Prot
  SAM_1 UniProtKB/Swiss-Prot
  SH3_2 UniProtKB/Swiss-Prot
PharmGKB PA134944093 PharmGKB
PRINTS ANKYRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/Swiss-Prot
  SH3 UniProtKB/Swiss-Prot
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM UniProtKB/Swiss-Prot
  SH3 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47769 UniProtKB/Swiss-Prot
  SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50044 UniProtKB/Swiss-Prot
UniProt B4DTT3 ENTREZGENE
  B7Z9H1 ENTREZGENE
  CSKI2_HUMAN UniProtKB/Swiss-Prot
  J3QKS3_HUMAN UniProtKB/TrEMBL
  J3QRN1_HUMAN UniProtKB/TrEMBL
  Q7LG69 ENTREZGENE
  Q8WXE0 ENTREZGENE
  Q9ULT1 ENTREZGENE
UniProt Secondary B4DTT3 UniProtKB/Swiss-Prot
  B7Z9H1 UniProtKB/Swiss-Prot
  Q7LG69 UniProtKB/Swiss-Prot
  Q9ULT1 UniProtKB/Swiss-Prot