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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Trim36 | Mouse | anencephaly | | ISO | TRIM36 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Trim36 | Mouse | anencephaly | | ISO | TRIM36 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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# | Reference Title | Reference Citation |
1. | Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. | Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78. |
2. | MGDs mouse GO annotations | MGD data from the GO Consortium |
3. | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:8889548 | PMID:10349636 | PMID:10725249 | PMID:10922068 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12477932 | PMID:12520002 | PMID:12917430 | PMID:14610273 | PMID:15489334 |
PMID:16141072 | PMID:16141073 | PMID:16434393 | PMID:16602821 | PMID:18799693 | PMID:19232519 | PMID:19906978 | PMID:21267068 | PMID:21677750 | PMID:21873635 | PMID:23055939 | PMID:24067652 |
PMID:24952961 | PMID:26671463 | PMID:27335464 | PMID:32311190 | PMID:32325033 | PMID:34321999 | PMID:38697008 |
Trim36 (Mus musculus - house mouse) |
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TRIM36 (Homo sapiens - human) |
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Trim36 (Rattus norvegicus - Norway rat) |
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Trim36 (Chinchilla lanigera - long-tailed chinchilla) |
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TRIM36 (Pan paniscus - bonobo/pygmy chimpanzee) |
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TRIM36 (Canis lupus familiaris - dog) |
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Trim36 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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TRIM36 (Sus scrofa - pig) |
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TRIM36 (Chlorocebus sabaeus - green monkey) |
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Trim36 (Heterocephalus glaber - naked mole-rat) |
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Variants in Trim36
1643 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
D18Wsu100e |
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RefSeq Transcripts | NM_001170855 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_178872 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036161165 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AB103063 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AC124717 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK033754 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AY251389 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC058106 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BM938922 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466528 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CJ046908 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CJ167273 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CJ301781 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSMUST00000037011 ⟹ ENSMUSP00000037978 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSMUST00000167364 ⟹ ENSMUSP00000129771 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSMUST00000237526 ⟹ ENSMUSP00000157724 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001170855 ⟹ NP_001164326 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_178872 ⟹ NP_849203 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036161165 ⟹ XP_036017058 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001164326 | (Get FASTA) | NCBI Sequence Viewer |
NP_849203 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036017058 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH58106 | (Get FASTA) | NCBI Sequence Viewer |
AAP51209 | (Get FASTA) | NCBI Sequence Viewer | |
BAC76066 | (Get FASTA) | NCBI Sequence Viewer | |
EDL09987 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000037978 | ||
ENSMUSP00000037978.5 | |||
ENSMUSP00000129771 | |||
ENSMUSP00000129771.2 | |||
ENSMUSP00000157724.2 | |||
GenBank Protein | Q80WG7 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_849203 ⟸ NM_178872 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q80WG7 (UniProtKB/Swiss-Prot), Q7TNM1 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_001164326 ⟸ NM_001170855 |
- Peptide Label: | isoform 2 |
- UniProtKB: | E9Q3A0 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSMUSP00000157724 ⟸ ENSMUST00000237526 |
Ensembl Acc Id: | ENSMUSP00000037978 ⟸ ENSMUST00000037011 |
Ensembl Acc Id: | ENSMUSP00000129771 ⟸ ENSMUST00000167364 |
RefSeq Acc Id: | XP_036017058 ⟸ XM_036161165 |
- Peptide Label: | isoform X1 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q80WG7-F1-model_v2 | AlphaFold | Q80WG7 | 1-729 | view protein structure |
RGD ID: | 13677732 | ||||||||
Promoter ID: | EPDNEW_M23015 | ||||||||
Type: | initiation region | ||||||||
Name: | Trim36_1 | ||||||||
Description: | Mus musculus tripartite motif-containing 36 , transcript variant1, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M23016 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 13677734 | ||||||||
Promoter ID: | EPDNEW_M23016 | ||||||||
Type: | initiation region | ||||||||
Name: | Trim36_2 | ||||||||
Description: | Mus musculus tripartite motif-containing 36 , transcript variant1, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M23015 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 6828950 | ||||||||
Promoter ID: | MM_KWN:25208 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, ES_Cell, Lung | ||||||||
Transcripts: | NM_001145259, NM_001170855 | ||||||||
Position: |
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RGD ID: | 6829596 | ||||||||
Promoter ID: | MM_KWN:25209 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | ES_Cell | ||||||||
Transcripts: | NM_178872 | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:106264 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000033949 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000037011 | ENTREZGENE |
ENSMUST00000037011.6 | UniProtKB/Swiss-Prot | |
ENSMUST00000167364 | ENTREZGENE | |
ENSMUST00000167364.9 | UniProtKB/TrEMBL | |
ENSMUST00000237526.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.20.5.170 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
2.60.120.920 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
2.60.40.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
3.30.40.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
4.10.830.40 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Classic Zinc Finger | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | B30.2/SPRY | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
B30.2/SPRY_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ConA-like_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
COS_domain | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
E3_ligase_FN3/SPRY | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
FN3_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
FN3_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Ig-like_fold | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Midline-1_COS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SPRY/PRY_TRIM36 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Trim36 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
TRIM36_Bbox1_Zfn | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
TRIM36_Bbox2_Zfn | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Znf-RING_LisH | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Znf_B-box | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Znf_RING | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Znf_RING/FYVE/PHD | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Znf_RING_CS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:28105 | UniProtKB/Swiss-Prot |
MGD | MGI:106264 | ENTREZGENE |
NCBI Gene | 28105 | ENTREZGENE |
PANTHER | E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR24099:SF18 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | COS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
fn3 | UniProtKB/TrEMBL | |
zf-B_box | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
zf-RING_UBOX | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Trim36 | PhenoGen |
PROSITE | B302_SPRY | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
COS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
FN3 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ZF_BBOX | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ZF_RING_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ZF_RING_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SMART | BBOX | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RING | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Superfamily-SCOP | B-box zinc-binding domain | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RING/U-box | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SSF49265 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SSF49899 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniProt | A0A494B9M7_MOUSE | UniProtKB/TrEMBL |
E9Q3A0 | ENTREZGENE, UniProtKB/TrEMBL | |
Q7TNM1 | ENTREZGENE | |
Q80WG7 | ENTREZGENE, UniProtKB/Swiss-Prot | |
UniProt Secondary | Q7TNM1 | UniProtKB/Swiss-Prot |