Efcab10 (EF-hand calcium binding domain 10)

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Gene: Efcab10 (EF-hand calcium binding domain 10) Mus musculus

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Symbol:

Efcab10

Name:

EF-hand calcium binding domain 10

RGD ID:

1317431

MGI Page

MGI

Description:

Predicted to enable calcium ion binding activity. Is expressed in lung. Orthologous to human EFCAB10 (EF-hand calcium binding domain 10).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

4930504H06Rik; EF-hand calcium-binding domain-containing protein 10

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EFCAB10 (EF-hand calcium binding domain 10)	HGNC	EggNOG, Ensembl, HGNC, Inparanoid, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Efcab10 (EF-hand calcium binding domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EFCAB10 (EF-hand calcium binding domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	EFCAB10 (EF-hand calcium binding domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Efcab10 (EF-hand calcium binding domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PUS7 (pseudouridine synthase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	EFCAB10 (EF-hand calcium binding domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Efcab10 (EF-hand calcium binding domain 10)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	EFCAB10 (EF-hand calcium binding domain 10)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-42p14.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	efcab10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	33,444,824 - 33,451,268 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	33,444,853 - 33,451,266 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	33,394,825 - 33,401,269 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	33,394,854 - 33,401,267 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	34,079,719 - 34,086,134 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	33,980,101 - 33,986,516 (+)	NCBI		MGSCv36	mm8
Celera	12	34,839,250 - 34,845,770 (+)	NCBI		Celera
Cytogenetic Map	12	A3	NCBI
cM Map	12	14.34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hereditary breast ovarian cancer syndrome (ISO)

Hereditary Neoplastic Syndromes (ISO)

Infantile Liver Failure Syndrome 3 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

6-propyl-2-thiouracil (ISO)

aflatoxin B1 (ISO)

benzo[a]pyrene (EXP,ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (EXP)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

Cuprizon (ISO)

glyphosate (ISO)

GW 4064 (EXP)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (EXP)

Monobutylphthalate (EXP)

ozone (EXP)

paracetamol (ISO)

permethrin (ISO)

pirinixic acid (EXP)

propanal (ISO)

titanium dioxide (EXP)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

calcium ion binding (IEA)

molecular_function (ND)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:12477932	PMID:14610273	PMID:16141072	PMID:16141073	PMID:17971504	PMID:27914912

Genomics

Comparative Map Data

Efcab10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	33,444,824 - 33,451,268 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	33,444,853 - 33,451,266 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	33,394,825 - 33,401,269 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	33,394,854 - 33,401,267 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	34,079,719 - 34,086,134 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	33,980,101 - 33,986,516 (+)	NCBI		MGSCv36	mm8
Celera	12	34,839,250 - 34,845,770 (+)	NCBI		Celera
Cytogenetic Map	12	A3	NCBI
cM Map	12	14.34	NCBI

EFCAB10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	105,565,124 - 105,581,493 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	105,565,120 - 105,600,875 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	105,205,571 - 105,221,940 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	104,992,689 - 105,009,177 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	100,010,699 - 100,027,094 (-)	NCBI		Celera
Cytogenetic Map	7	q22.3	NCBI
HuRef	7	99,563,858 - 99,580,241 (-)	NCBI		HuRef
CHM1_1	7	105,138,892 - 105,155,283 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	106,879,330 - 106,895,701 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	104,566,137 - 104,582,536 (-)	NCBI

Efcab10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	55,731,902 - 55,738,821 (+)	NCBI		GRCr8
mRatBN7.2	6	50,004,479 - 50,011,398 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	50,004,479 - 50,011,398 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	50,309,027 - 50,315,996 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	50,623,962 - 50,630,931 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	50,062,942 - 50,069,893 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	52,702,304 - 52,709,223 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	52,702,544 - 52,709,223 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	62,323,316 - 62,330,235 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	51,741,044 - 51,747,963 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	51,744,407 - 51,751,089 (+)	NCBI
Celera	6	49,194,412 - 49,201,339 (+)	NCBI		Celera
Cytogenetic Map	6	q16	NCBI

EFCAB10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	142,415,837 - 142,432,528 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	190,685,805 - 190,702,289 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	97,556,418 - 97,571,987 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	110,285,036 - 110,301,514 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	110,285,036 - 110,301,501 (-)	Ensembl	panpan1.1		panPan2

EFCAB10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	14,833,401 - 14,844,081 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	14,833,472 - 14,845,956 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	14,484,482 - 14,495,115 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	15,135,732 - 15,146,558 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	15,135,758 - 15,148,449 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	14,921,898 - 14,932,520 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	14,844,769 - 14,855,466 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	15,124,870 - 15,135,501 (+)	NCBI		UU_Cfam_GSD_1.0

Efcab10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	57,181,530 - 57,188,497 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936479	18,305,334 - 18,314,449 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936479	18,305,335 - 18,312,252 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PUS7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	105,419,056 - 105,445,682 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	105,424,408 - 105,445,667 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	116,193,298 - 116,213,600 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EFCAB10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	74,490,873 - 74,505,942 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666042	29,411,131 - 29,424,270 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Efcab10
259 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	103
Count of miRNA genes:	92
Interacting mature miRNAs:	94
Transcripts:	ENSMUST00000020878
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301723	Fcsa7_m	femoral cross-sectional area 7 (mouse)			Not determined		12	9491004	43491112	Mouse
15039339	Nmrs29_m	NAFLD-associated magnetic resonance shift 29 (mouse)					12	17825852	51825852	Mouse
1302172	Skts5_m	skin tumor susceptibility 5 (mouse)			Not determined		12	22148866	56149016	Mouse
1300636	Gct2_m	granulosa cell tumorigenesis 2 (mouse)			Not determined		12	29160685	63160884	Mouse
10043977	Obq34_m	obesity QTL 34 (mouse)			Not determined		12	15147331	49147331	Mouse
10043848	Hdlq90_m	HDL QTL 90 (mouse)			Not determined		12	17839939	51840081	Mouse
1558978	Cplaq10_m	circadian period of locomotor activity 10 (mouse)			Not determined		12	15341026	79040364	Mouse
1301574	Lmblgq5_m	limb length QTL 5 (mouse)			Not determined		12	17596447	80956883	Mouse
1300870	Ath18_m	atherosclerosis 18 (mouse)			Not determined		12	18259966	52260067	Mouse
13207568	Tcq14_m	total cholesterol QTL 14 (mouse)					12	11660001	97176774	Mouse
27226753	Femd7_m	femur midshaft diameter 7, 10 week (mouse)					12	9550000	84146774	Mouse
14747008	Mancz10_m	mandible centroid size 10 (mouse)					12	29863522	63863522	Mouse
4141660	Nbwa1_m	NZB and NZW autoimmunity 1 (mouse)			Not determined		12	340134	34340302	Mouse
4142234	Tmc1m3_m	Tmc1 modifier 3 (mouse)			Not determined		12	5418440	77031203	Mouse
13524843	Ppiq8_m	prepulse inhibition QTL 8 (mouse)					12	11043194	50945796	Mouse
26884413	Bzwq9_m	bi-zygomatic width QTL 9, 10 week (mouse)					12	16150001	47746783	Mouse
13524839	Ppiq10_m	prepulse inhibition QTL 10 (mouse)					12	13043195	54945798	Mouse
4141843	Moen3_m	modifier of engrailed QTL 3 (mouse)			Not determined		12	29801584	63801733	Mouse
13208568	Bmiq11_m	body mass index QTL 11 (mouse)					12	8050000	40049999	Mouse
4141516	slwr_m	slowlearner (mouse)			Not determined			12392475	46392614	Mouse
1301989	Hdlq18_m	HDL QTL 18 (mouse)			Not determined		12	29160685	63160884	Mouse
1301163	Eae16_m	susceptibility to experimental allergic encephalomyelitis 16 (mouse)			Not determined		12	7723158	41723301	Mouse
12904956	Edlmmq10_m	extensor digitorum longus muscle mass QTL 10 (mouse)					12	19739833	53739833	Mouse
14746972	Manh72_m	mandible shape 72 (mouse)					12	10615281	44615281	Mouse
1301037	Cd4ts5_m	CD4 T cell subset 5 (mouse)			Not determined		12	8352444	42352581	Mouse
10401249	Bglu15_m	blood glucose level 15 (mouse)			Not determined		12	10620642	44620809	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_029152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030246964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC160112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK015697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC119387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC120662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF459438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000020878 ⟹ ENSMUSP00000020878

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	33,444,853 - 33,451,266 (+)	Ensembl
GRCm38.p6 Ensembl	12	33,394,854 - 33,401,267 (+)	Ensembl

RefSeq Acc Id:

NM_029152 ⟹ NP_083428

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	12	33,444,853 - 33,451,268 (+)	NCBI
GRCm38	12	33,394,854 - 33,401,269 (+)	ENTREZGENE
MGSCv37	12	34,079,719 - 34,086,134 (+)	RGD
Celera	12	34,839,250 - 34,845,770 (+)	RGD
cM Map	12		ENTREZGENE

Sequence:

show sequence

GGACCAAACAAGCTCAGCCTCTGTGTTGGCAACTGCATCACAAGCTGGTGTCACAGACTGCCCG
CCACACCCCTGCTTCTTCCTCAGGGGTGTGGAAGGGGGTTGTCCTGGTACCTGGGAGGGAAGAG
GAGTGGGGCTGGGGAAGGTGAGGTGTTTCACGTGAATGAGCACGAAAGGGGCGGAGTTGGGCCC
CCTGGAGGCTGCCTGGTCGCCTAGCAACGGCTCAGCTAGGAAACATGGAGCCTGTGGCTGACCG
GGAGCTTCAGGCCAAGCTGTATTTAGAAAGACATCGGATCATGGAATTGCTGAATCAACTTACT
AGCTTCCTCCTCTTTGCCCGACCAAAAAAACCAAGAGAGTATTTAATCTCTCTTTTGGAACGTC
TGAGAGTTGCCAAGGCAACACACGTGGCATTTCCCTACTTTATGGACAACTCTAACACTGTGTC
CATGTTTGAGATGATGGACATGGCCGGCAGAGGCTGCATATCATTTGTGCAGTATAAAGAAGCC
CTAAAAAACTTGGGTCTGTGTACTGCAGATGAAGTTTTGAATGATGATGGACATATAATCACTC
TGGATACATTCAGGGATGAAATGAACAAGAGGATGGAAAAAATGTGGTCAATGTTTTAGTGGCA
TTGTAGCTCAAGATAATAAATGGTCCTACCACGTTAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_030246964 ⟹ XP_030102824

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	12	33,444,824 - 33,451,268 (+)	NCBI
GRCm38	12	33,394,825 - 33,401,269 (+)	NCBI

Sequence:

show sequence

GAACAAACAAGTACAGGAAGCAGGAACCCGGACCAAACAAGCTCAGCCTCTGTGTTGGCAACTG
CATCACAAGCTGGTGTCACAGACTGCCCGCCACACCCCTGCTTCTTCCTCAGGGGTGTGGAAGG
GGGTTGTCCTGGTACCTGGGAGGGAAGAGGAGTGGGGCTGGGGAAGGTGAGGTGTTTCACGTGA
ATGAGCACGAAAGGGGCGGAGTTGGGCCCCCTGGAGGCTGCCTGGTCGCCTAGCAACGGCTCAG
CTAGGAAACATGGAGCCTGTGGCTGACCGGGAGCTTCAGGCCAAGCTGTATTTAGAAAGACATC
GGATCATGGAATTGCTGAATCAACTTACTAGCTTCCTCCTCTTTGCCCGACCAACCCTAAAAAA
CTTGGGTCTGTGTACTGCAGATGAAGTTTTGAATGATGATGGACATATAATCACTCTGGATACA
TTCAGGGATGAAATGAACAAGAGGATGGAAAAAATGTGGTCAATGTTTTAGTGGCATTGTAGCT
CAAGATAATAAATGGTCCTACCACGTT

hide sequence

Protein Sequences


Protein RefSeqs	NP_083428	(Get FASTA)	NCBI Sequence Viewer
	XP_030102824	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAB29935	(Get FASTA)	NCBI Sequence Viewer
	EDL36874	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000020878
	ENSMUSP00000020878.7
GenBank Protein	Q9D581	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_083428 ⟸ NM_029152
- UniProtKB:	Q9D581 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MEPVADRELQAKLYLERHRIMELLNQLTSFLLFARPKKPREYLISLLERLRVAKATHVAFPYFM DNSNTVSMFEMMDMAGRGCISFVQYKEALKNLGLCTADEVLNDDGHIITLDTFRDEMNKRMEKM WSMF hide sequence

RefSeq Acc Id:	XP_030102824 ⟸ XM_030246964
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSMUSP00000020878 ⟸ ENSMUST00000020878

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9D581-F1-model_v2	AlphaFold	Q9D581	1-132	view protein structure

Promoters

RGD ID:

8678128

Promoter ID:

EPDNEW_M17095

Type:

initiation region

Name:

Efcab10_1

Description:

Mus musculus EF-hand calcium binding domain 10 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	12	33,394,819 - 33,394,879	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1922290	AgrOrtholog
Ensembl Genes	ENSMUSG00000020562	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000020878	ENTREZGENE
	ENSMUST00000020878.8	UniProtKB/Swiss-Prot
InterPro	DD_EFCAB10	UniProtKB/Swiss-Prot
	EF-hand-dom_pair	UniProtKB/Swiss-Prot
	EF_hand_dom	UniProtKB/Swiss-Prot
	EFC10	UniProtKB/Swiss-Prot
KEGG Report	mmu:75040	UniProtKB/Swiss-Prot
MGD	MGI:1922290	ENTREZGENE
NCBI Gene	75040	ENTREZGENE
PANTHER	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 10	UniProtKB/Swiss-Prot
	PTHR21847	UniProtKB/Swiss-Prot
PhenoGen	Efcab10	PhenoGen
PROSITE	EF_HAND_2	UniProtKB/Swiss-Prot
Superfamily-SCOP	Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit	UniProtKB/Swiss-Prot
	SSF47473	UniProtKB/Swiss-Prot
UniProt	EFC10_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar