Mospd4 (motile sperm domain containing 4) - Rat Genome Database

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Gene: Mospd4 (motile sperm domain containing 4) Mus musculus
Analyze
Symbol: Mospd4
Name: motile sperm domain containing 4
RGD ID: 1312428
MGI Page MGI
Description: INTERACTS WITH 1,2-dimethylhydrazine; 4,4'-sulfonyldiphenol; epoxiconazole
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: 2010013H21Rik
Related Functional Gene: Vapa  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391846,598,001 - 46,598,883 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1846,598,282 - 46,598,857 (-)EnsemblGRCm39 Ensembl
GRCm381846,464,934 - 46,465,816 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1846,465,215 - 46,465,790 (-)EnsemblGRCm38mm10GRCm38
MGSCv371846,624,588 - 46,625,470 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361846,590,256 - 46,595,015 (-)NCBIMGSCv36mm8
Celera1847,825,187 - 47,826,069 (-)NCBICelera
Cytogenetic Map18CNCBI
cM Map1824.59NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Mospd4
37 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:204
Count of miRNA genes:192
Interacting mature miRNAs:198
Transcripts:ENSMUST00000061488, ENSMUST00000180618
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
10412184Sstapa1_mSuseptibility to Staphylococus aureus infection 1 (mouse)Not determined184654154657590708Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184513060468778777Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181901887453018992Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
1300994Pvcan3_mprotection against vaginal candidiasis 3 (mouse)Not determined181619964050199776Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse
13504732Cath6_mcarotid atherosclerosis 6 (mouse)181363712647637126Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184331112077311343Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
1301307Phospq1_mphospholipid QTL 1 (mouse)Not determined181813970452139859Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184642328780423287Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182605687560056875Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182724111558827077Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse

Markers in Region
RH139059  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381846,465,261 - 46,465,394UniSTSGRCm38
MGSCv371846,624,915 - 46,625,048UniSTSGRCm37
Celera1847,825,514 - 47,825,647UniSTS
Cytogenetic Map18CUniSTS
UniSTS:487945  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381846,465,088 - 46,465,814UniSTSGRCm38
MGSCv371846,624,742 - 46,625,468UniSTSGRCm37
Celera1847,825,341 - 47,826,067UniSTS
Cytogenetic Map18CUniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000180618
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1846,598,282 - 46,598,857 (-)Ensembl
GRCm38.p6 Ensembl1846,465,215 - 46,465,790 (-)Ensembl
RefSeq Acc Id: NR_045438
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391846,598,001 - 46,598,883 (-)NCBI
GRCm381846,464,934 - 46,465,816 (-)ENTREZGENE
Celera1847,825,187 - 47,826,069 (-)ENTREZGENE
cM Map18 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAB25547 (Get FASTA)   NCBI Sequence Viewer  
  BAC36507 (Get FASTA)   NCBI Sequence Viewer  
  EDL09982 (Get FASTA)   NCBI Sequence Viewer  
Protein Domains
MSP

Promoters
RGD ID:13677740
Promoter ID:EPDNEW_M23019
Type:initiation region
Name:Mospd4_1
Description:Mus musculus motile sperm domain containing 4 , non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381846,465,806 - 46,465,866EPDNEW
RGD ID:6829381
Promoter ID:MM_KWN:25220
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:NM_028086
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361846,624,831 - 46,625,357 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919326 AgrOrtholog
Ensembl Genes ENSMUSG00000046487 Ensembl
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
  Major_sperm UniProtKB/TrEMBL
  PapD-like UniProtKB/TrEMBL
  VAP UniProtKB/TrEMBL
MGD MGI:1919326 ENTREZGENE
NCBI Gene 72076 ENTREZGENE
PANTHER PTHR10809 UniProtKB/TrEMBL
  VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN A UniProtKB/TrEMBL
Pfam Motile_Sperm UniProtKB/TrEMBL
PhenoGen Mospd4 PhenoGen
PIRSF VAMP-associated UniProtKB/TrEMBL
PROSITE MSP UniProtKB/TrEMBL
Superfamily-SCOP PapD-like UniProtKB/TrEMBL
UniProt Q8BVR1_MOUSE UniProtKB/TrEMBL
  Q9D8A4_MOUSE UniProtKB/TrEMBL