LOC101957317 (zinc finger protein 773) - Rat Genome Database

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Gene: LOC101957317 (zinc finger protein 773) Ictidomys tridecemlineatus
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Symbol: LOC101957317 (Ensembl: ZNF773)
Name: zinc finger protein 773
RGD ID: 12725061
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); zinc ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); FOUND IN chromatin (inferred); PcG protein complex (inferred); transcription regulator complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein 419; Znf419
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409349404,949 - 416,177 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936897290,548 - 299,671 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936897290,596 - 296,415 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000034477   ⟹   ENSSTOP00000028105
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936897290,548 - 299,671 (+)Ensembl
RefSeq Acc Id: XM_021721105   ⟹   XP_021576780
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409349410,310 - 416,151 (-)NCBI
SpeTri2.0NW_004936897290,596 - 296,415 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040280098   ⟹   XP_040136032
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409349407,300 - 416,152 (-)NCBI
RefSeq Acc Id: XM_040280099   ⟹   XP_040136033
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409349404,949 - 416,177 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021576780 (Get FASTA)   NCBI Sequence Viewer  
  XP_040136032 (Get FASTA)   NCBI Sequence Viewer  
  XP_040136033 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000028105.1
GenBank Protein KAG3255537 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021576780   ⟸   XM_021721105
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040136033   ⟸   XM_040280099
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040136032   ⟸   XM_040280098
- Peptide Label: isoform X2
Ensembl Acc Id: ENSSTOP00000028105   ⟸   ENSSTOT00000034477
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000029907 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000034477.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC101957317 ENTREZGENE
PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 143 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A287D3L2_ICTTR UniProtKB/TrEMBL