LOC101977128 (zinc finger protein 266-like) - Rat Genome Database

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Gene: LOC101977128 (zinc finger protein 266-like) Ictidomys tridecemlineatus
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Symbol: LOC101977128
Name: zinc finger protein 266-like
RGD ID: 12702496
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); nucleic acid binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein 426-like; zinc finger protein 501-like; zinc finger protein 561-like; zinc finger protein OZF-like
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118210,152,221 - 210,174,342 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936659180,364 - 202,593 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_013363282   ⟹   XP_013218736
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118210,152,221 - 210,174,342 (+)NCBI
SpeTri2.0NW_004936659180,364 - 202,593 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013363283   ⟹   XP_013218737
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118210,152,221 - 210,174,342 (+)NCBI
SpeTri2.0NW_004936659180,364 - 202,593 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021733833   ⟹   XP_021589508
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118210,152,221 - 210,174,342 (+)NCBI
SpeTri2.0NW_004936659180,364 - 202,593 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021733834   ⟹   XP_021589509
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118210,152,221 - 210,174,342 (+)NCBI
SpeTri2.0NW_004936659180,364 - 187,192 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021733836   ⟹   XP_021589511
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118210,152,221 - 210,174,342 (+)NCBI
SpeTri2.0NW_004936659180,364 - 187,192 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040291089   ⟹   XP_040147023
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118210,152,235 - 210,174,342 (+)NCBI
RefSeq Acc Id: XM_040291090   ⟹   XP_040147024
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118210,152,532 - 210,174,342 (+)NCBI
RefSeq Acc Id: XM_040291091   ⟹   XP_040147025
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118210,167,452 - 210,174,342 (+)NCBI
RefSeq Acc Id: XM_040291092   ⟹   XP_040147026
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118210,161,769 - 210,174,342 (+)NCBI
RefSeq Acc Id: XM_040291093   ⟹   XP_040147027
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118210,152,221 - 210,174,342 (+)NCBI
RefSeq Acc Id: XM_040291094   ⟹   XP_040147028
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118210,152,221 - 210,174,342 (+)NCBI
RefSeq Acc Id: XM_040291095   ⟹   XP_040147029
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118210,152,221 - 210,174,342 (+)NCBI
RefSeq Acc Id: XP_013218737   ⟸   XM_013363283
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013218736   ⟸   XM_013363282
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_021589508   ⟸   XM_021733833
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021589509   ⟸   XM_021733834
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021589511   ⟸   XM_021733836
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_040147029   ⟸   XM_040291095
- Peptide Label: isoform X8
RefSeq Acc Id: XP_040147027   ⟸   XM_040291093
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040147028   ⟸   XM_040291094
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040147023   ⟸   XM_040291089
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040147024   ⟸   XM_040291090
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040147026   ⟸   XM_040291092
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040147025   ⟸   XM_040291091
- Peptide Label: isoform X1
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000033735 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000032638.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro C2H2-ZF_domain UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC101977128 ENTREZGENE
PANTHER FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 562 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A287CW91_ICTTR UniProtKB/TrEMBL