LOC101959493 (HLA class I histocompatibility antigen, alpha chain G-like) - Rat Genome Database

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Gene: LOC101959493 (HLA class I histocompatibility antigen, alpha chain G-like) Ictidomys tridecemlineatus
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Symbol: LOC101959493
Name: HLA class I histocompatibility antigen, alpha chain G-like
RGD ID: 12671432
Description: ENCODES a protein that exhibits peptide antigen binding (inferred); signaling receptor binding (inferred); INVOLVED IN antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent (inferred); antigen processing and presentation of endogenous peptide antigen via MHC class Ib (inferred); antigen processing and presentation of peptide antigen via MHC class I (inferred); FOUND IN external side of plasma membrane (inferred); extracellular space (inferred); lumenal side of endoplasmic reticulum membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: HLA class I histocompatibility antigen, alpha chain G-like, transcript variant X1; HLA class I histocompatibility antigen, alpha chain G-like, transcript variant X2
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494633,792,645 - 33,803,690 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936837157,914 - 168,538 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_013365559   ⟹   XP_013221013
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494633,792,645 - 33,803,690 (+)NCBI
SpeTri2.0NW_004936837157,914 - 168,538 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021720697   ⟹   XP_021576372
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494633,792,645 - 33,803,690 (+)NCBI
SpeTri2.0NW_004936837157,914 - 168,538 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005732682
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494633,792,645 - 33,803,690 (+)NCBI
Protein Sequences
Protein RefSeqs XP_013221013 (Get FASTA)   NCBI Sequence Viewer  
  XP_021576372 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000019879.2
  ENSSTOP00000024668.1
GenBank Protein KAG3288981 (Get FASTA)   NCBI Sequence Viewer  
  KAG3288982 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013221013   ⟸   XM_013365559
- Peptide Label: isoform X2
- UniProtKB: I3N683 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021576372   ⟸   XM_021720697
- Peptide Label: isoform X1
- UniProtKB: A0A287CTS0 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019861 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027325.2 UniProtKB/TrEMBL
  ENSSTOT00000039201.1 UniProtKB/TrEMBL
Gene3D-CATH Immunoglobulins UniProtKB/TrEMBL
  MHC class I-like antigen recognition-like UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_class-I_related UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_I_a_a1/a2 UniProtKB/TrEMBL
NCBI Gene LOC101959493 ENTREZGENE
PANTHER CLASS IB MHC ANTIGEN QA-2-RELATED UniProtKB/TrEMBL
  MHC CLASS I-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_I UniProtKB/TrEMBL
PRINTS MHCCLASSI UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP Immunoglobulin UniProtKB/TrEMBL
  MHC antigen-recognition domain UniProtKB/TrEMBL
UniProt A0A287CTS0 ENTREZGENE, UniProtKB/TrEMBL
  I3N683 ENTREZGENE, UniProtKB/TrEMBL