LOC101973519 (interferon-inducible GTPase 1-like) - Rat Genome Database

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Gene: LOC101973519 (interferon-inducible GTPase 1-like) Ictidomys tridecemlineatus
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Symbol: LOC101973519
Name: interferon-inducible GTPase 1-like
RGD ID: 12660807
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); hydrolase activity (inferred); INVOLVED IN autophagosome assembly (inferred); cellular response to interferon-beta (inferred); innate immune response (inferred); FOUND IN endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213142,547,750 - 142,553,237 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365044,125,169 - 4,127,174 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013358135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_013358135   ⟹   XP_013213589
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213142,547,750 - 142,553,237 (+)NCBI
SpeTri2.0NW_0049365044,125,169 - 4,127,174 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013213589 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000028917.1
GenBank Protein KAG3265953 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013213589   ⟸   XM_013358135
- UniProtKB: A0A287D5Q5 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
IRG-type G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000030572 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000033719.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro G_IRG_dom UniProtKB/TrEMBL
  Immunity-related_GTPase-like UniProtKB/TrEMBL
  IRG UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene LOC101973519 ENTREZGENE
PANTHER INTERFERON-INDUCIBLE GTPASE UniProtKB/TrEMBL
  RIKEN CDNA 9930111J21 GENE 1-RELATED UniProtKB/TrEMBL
Pfam IIGP UniProtKB/TrEMBL
PROSITE G_IRG UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A287D5Q5 ENTREZGENE, UniProtKB/TrEMBL