LOC101966441 (histone H2A type 2-A) - Rat Genome Database

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Gene: LOC101966441 (histone H2A type 2-A) Ictidomys tridecemlineatus
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Symbol: LOC101966441
Name: histone H2A type 2-A
RGD ID: 12656989
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); FOUND IN chromosome (inferred); nucleosome (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: HIST2H2AA3
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505821,152,544 - 21,154,062 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936580183,504 - 184,387 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA)
nucleosome  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005331136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_005331136   ⟹   XP_005331193
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505821,152,544 - 21,154,062 (-)NCBI
SpeTri2.0NW_004936580183,504 - 184,387 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005331193 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015190.2
  ENSSTOP00000021499.1
GenBank Protein KAG3281432 (Get FASTA)   NCBI Sequence Viewer  
  KAG3281433 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005331193   ⟸   XM_005331136
- UniProtKB: I3NAV2 (UniProtKB/TrEMBL),   I3MSU5 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Histone H2A C-terminal   Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000022473 UniProtKB/TrEMBL
  ENSSTOG00000026866 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000023533.2 UniProtKB/TrEMBL
  ENSSTOT00000023750.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2A_C UniProtKB/TrEMBL
  Histone_H2A_CS UniProtKB/TrEMBL
NCBI Gene LOC101966441 ENTREZGENE
PANTHER HISTONE H2A TYPE 2-A UniProtKB/TrEMBL
  HISTONE H2A.J UniProtKB/TrEMBL
  PTHR23430 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
  Histone_H2A_C UniProtKB/TrEMBL
PRINTS HISTONEH2A UniProtKB/TrEMBL
PROSITE HISTONE_H2A UniProtKB/TrEMBL
SMART H2A UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt I3MSU5 ENTREZGENE, UniProtKB/TrEMBL
  I3NAV2 ENTREZGENE, UniProtKB/TrEMBL