Khdc1l (KH domain containing 1 like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Khdc1l (KH domain containing 1 like) Ictidomys tridecemlineatus
Analyze
Symbol: Khdc1l
Name: KH domain containing 1 like
RGD ID: 12636337
Description: ENCODES a protein that exhibits RNA binding (inferred); ASSOCIATED WITH sialuria (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Bonobo
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494670,666,899 - 70,667,409 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049420183,096 - 3,557 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
sialuria  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

Molecular Function
RNA binding  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Khdc1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494670,666,899 - 70,667,409 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049420183,096 - 3,557 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KHDC1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38673,223,544 - 73,225,496 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl673,223,544 - 73,225,770 (-)EnsemblGRCh38hg38GRCh38
GRCh37673,933,267 - 73,935,219 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36673,989,988 - 73,991,896 (-)NCBINCBI36Build 36hg18NCBI36
Celera674,326,519 - 74,328,427 (-)NCBICelera
Cytogenetic Map6q13NCBI
HuRef671,131,973 - 71,133,881 (-)NCBIHuRef
CHM1_1674,100,118 - 74,102,023 (-)NCBICHM1_1
T2T-CHM13v2.0674,400,206 - 74,402,158 (-)NCBIT2T-CHM13v2.0
Khdc1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39121,419,901 - 21,422,423 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl121,419,865 - 21,422,424 (+)EnsemblGRCm39 Ensembl
GRCm38121,349,677 - 21,352,199 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl121,349,641 - 21,352,200 (+)EnsemblGRCm38mm10GRCm38
MGSCv37121,339,758 - 21,342,280 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36121,335,065 - 21,337,350 (+)NCBIMGSCv36mm8
Celera121,218,833 - 21,221,356 (+)NCBICelera
Cytogenetic Map1A4NCBI
cM Map16.59NCBI
KHDC1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2593,202,517 - 93,242,507 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1691,128,419 - 91,168,254 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0671,049,965 - 71,089,548 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1674,340,775 - 74,342,371 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl674,340,775 - 74,342,371 (-)Ensemblpanpan1.1panPan2
KHDC1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1171,902,568 - 1,907,152 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660587,825,363 - 7,827,219 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005342886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_005342886   ⟹   XP_005342943
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494670,666,899 - 70,667,409 (+)NCBI
SpeTri2.0NW_0049420183,096 - 3,557 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005342943 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000027482.1
GenBank Protein KAG3289790 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005342943   ⟸   XM_005342886
- UniProtKB: A0A287D1T5 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
KH-like RNA-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000033137 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000032399.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/TrEMBL
InterPro KH_dom_type_1_sf UniProtKB/TrEMBL
  MOEP19_KH-like UniProtKB/TrEMBL
NCBI Gene Khdc1l ENTREZGENE
PANTHER DEVELOPMENT PLURPOTENCY-ASSOCIATED PROTEIN 1/5 FAMILY MEMBER UniProtKB/TrEMBL
  KH HOMOLOGY DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam MOEP19 UniProtKB/TrEMBL
UniProt A0A287D1T5 ENTREZGENE, UniProtKB/TrEMBL