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Gene: Mrps2 (mitochondrial ribosomal protein S2) Ictidomys tridecemlineatus

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Symbol:

Mrps2

Name:

mitochondrial ribosomal protein S2

RGD ID:

12605461

Description:

ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN mitochondrial ribosome assembly (inferred); translation (inferred); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); combined oxidative phosphorylation deficiency 36 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); FOUND IN mitochondrial small ribosomal subunit (inferred); mitochondrion (inferred); ribonucleoprotein complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

28S ribosomal protein S2, mitochondrial

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	201,308,907 - 201,311,012 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936669	2,064,016 - 2,066,247 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936669	2,064,046 - 2,066,136 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Adams-Oliver Syndrome 5 (ISO)

combined oxidative phosphorylation deficiency 36 (ISO)

developmental and epileptic encephalopathy 14 (ISO)

Ehlers-Danlos syndrome classic type 1 (ISO)

Joubert syndrome 1 (ISO)

Kleefstra syndrome 1 (ISO)

Leigh disease (ISO)

primary coenzyme Q10 deficiency 7 (ISO)

Rafiq syndrome (ISO)

tuberous sclerosis 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial ribosome assembly (IEA)

translation (IEA)

Cellular Component

mitochondrial small ribosomal subunit (IEA)

mitochondrion (IEA)

ribonucleoprotein complex (IEA)

ribosome (IEA)

small ribosomal subunit (IEA)

Molecular Function

structural constituent of ribosome (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Mrps2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	201,308,907 - 201,311,012 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936669	2,064,016 - 2,066,247 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936669	2,064,046 - 2,066,136 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	135,499,965 - 135,504,673 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	135,499,984 - 135,504,673 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	138,391,811 - 138,396,519 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	137,532,375 - 137,536,340 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	135,618,498 - 135,622,462	NCBI
Celera	9	108,909,613 - 108,913,649 (+)	NCBI		Celera
Cytogenetic Map	9	q34.3	NCBI
HuRef	9	107,854,303 - 107,858,345 (+)	NCBI		HuRef
CHM1_1	9	138,541,056 - 138,545,098 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	147,728,043 - 147,732,751 (+)	NCBI		T2T-CHM13v2.0

Mrps2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	28,355,963 - 28,361,189 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	28,358,078 - 28,361,190 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	28,465,951 - 28,471,177 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	28,468,066 - 28,471,178 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	28,323,586 - 28,326,697 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	28,290,075 - 28,293,186 (+)	NCBI		MGSCv36	mm8
Celera	2	28,172,347 - 28,175,458 (+)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	19.38	NCBI

Mrps2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	32,201,037 - 32,204,317 (+)	NCBI		GRCr8
mRatBN7.2	3	11,803,044 - 11,806,341 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	11,801,310 - 11,806,313 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	14,875,455 - 14,878,688 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	23,460,405 - 23,463,638 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	21,714,851 - 21,718,084 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	7,051,695 - 7,056,726 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	7,051,695 - 7,058,521 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	12,402,368 - 12,407,382 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	7,456,261 - 7,461,264 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	7,457,304 - 7,460,716 (+)	NCBI
Celera	3	6,582,720 - 6,587,723 (+)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

Mrps2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	4,055,819 - 4,062,049 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955513	4,055,814 - 4,058,507 (+)	NCBI	ChiLan1.0	ChiLan1.0

MRPS2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	3,813,853 - 3,817,908 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	3,816,186 - 3,820,908 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	106,640,673 - 106,645,374 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	135,633,900 - 135,637,926 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	135,633,900 - 135,637,926 (+)	Ensembl	panpan1.1		panPan2

MRPS2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	51,211,701 - 51,214,465 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	51,211,627 - 51,214,475 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	50,508,068 - 50,510,744 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	52,101,995 - 52,104,672 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	9	50,880,822 - 50,883,498 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	51,205,345 - 51,208,028 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	51,284,484 - 51,287,160 (+)	NCBI		UU_Cfam_GSD_1.0

MRPS2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa10.2	1	308,635,664 - 308,638,776 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPS2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	2,665,725 - 2,669,478 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	2,665,620 - 2,669,407 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666058	2,488,346 - 2,492,142 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrps2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624760	3,112,670 - 3,115,621 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013363584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000002268 ⟹ ENSSTOP00000002026

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936669	2,064,016 - 2,066,247 (-)	Ensembl

RefSeq Acc Id:

XM_013363584 ⟹ XP_013219038

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	201,308,907 - 201,311,012 (+)	NCBI
SpeTri2.0	NW_004936669	2,064,046 - 2,066,136 (-)	NCBI

Sequence:

show sequence

GAGCCTGTGCTGATCACGTGGCCCGGGGACCCCTTGGGCACCAGGCCGTCCGCCTTGCTGGGTT
CATGCAGGGGGATTTCTGGCGACGGACCTGAGTCTGTCTGCCAGGCCTGGTGGCTGGGAGGGCC
ACAGGGACCCCAGACAAGGGATGGTAGTGACCCGGCTTACCCACAAGCTGGGTCTCCTTCAGAA
CCCGGGTCCAGCTCTGTTTGCTGTGAAGGCCACTATGGCTTCCTGGGGTCTCCTGGGGCTGGGT
GCGTCTTGGCTGCCGGGCTTCTCCCAGAACCCCCCAGCCCTGTGGCTTCCACTCAGGGATCCCT
GGTTGCTGGGTGGGCCCAGTGGGAAACCACAGCTTCCTGCCCTCCCTGCCCTAGAAACCCACCG
CAAGATCCTGGAGGAGCCCCTCAGACACGCTGACTTCTTCAACGTCAAGGAGCTGTTTTCAGTG
AAAAGCCTCTTTGATGCCCGCGTGCACCTGGGACACAAAGCTGGCTGTCGCCACAGGTTTATGG
AGCCCTACATCTTCGGGAGCCGCCTGGACCAGGACATCATCGACCTGGAACAGACAGCTTCGCA
CCTCCACCTAGCCTTGAATTTTACTGCCCACGTGGCCTACCGAAAGGGCATCATTCTGTTCGTG
AGCCGCAACCGGCAGTTCACACACCTGATCGAGAACACAGCCCGGGACTGCGGCGAGTATGCCC
ACACCCGCTACTTCAAGGGTGGCCTGCTGACCAATGCCCCGCTCCTCTTCGGCCCCACGGTCCG
CCTGCCTGACCTCATCATCTTCCTGCACACACTCAACAACGTCTTCGAGCCCCACGTGGCTGTG
AGGGACGCAGCCAAGATGAACATCCCCACAGTCGGTGTCGTGGACACCAACTGCAACCCCTGCC
TCATCACCTACCCCGTGCCTGGCAACGACGACTCCCCACCGTCTGTCCAGCTCTTCTGCAGGCT
CTTCCGCACGGTCATTACCCGGGCCAAGGAGAAACGGCGCCAGGTGGAGGCCCTGCATCGATTG
CAGAGCCCCAAGCGGGCAGAGGGCCACGGGGCAGCTGACTCTCCTCCCAGAGTGGATGTGAGCC
ATTCCCTGTGACAGGCCACGATCCTCGTCCCAAGTCACCATGAGGCCTGGTCTGAGCTGGAAGT
CCCTTGCATTCTCCGTCCTAGGCTCTTGTTAGTAACAGCACTCAATAGCCCCAACCATCCCTGG
GCTGAGACTTGGCTGCATCTTCGTGGGGCAGACACGCAGGGCAAACCGCATGTCCCCAGTGGCC
TGGTTAGGACCTGAAGCTGATACCTTGACTGCTGGAAAACCAGGTTCTCCCTGGCCCCTGAGAA
GTCCTGGCTTCCACCTTGACACTGGGTGTCAGGAAGGTTCAGATACCAGTTCAGTTCTCAATCA
GAATCCCCCTGGTGGGCTGCTTTCCCTGGCAGCCTGGCTTCAGGGGCCATTTTGCACTGTGATG
AGGCACAAGTCCCTGGGAAGTTCTGCCTGGGACAGGCCGAGCAAAGCAGCTGGCAGCAAAAATA
AAGTTATGTTTGAGCAGAATGTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013219038	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000002026.3
GenBank Protein	KAG3288317	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013219038 ⟸ XM_013363584

- UniProtKB:

I3M034 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVVTRLTHKLGLLQNPGPALFAVKATMASWGLLGLGASWLPGFSQNPPALWLPLRDPWLLGGPS
GKPQLPALPALETHRKILEEPLRHADFFNVKELFSVKSLFDARVHLGHKAGCRHRFMEPYIFGS
RLDQDIIDLEQTASHLHLALNFTAHVAYRKGIILFVSRNRQFTHLIENTARDCGEYAHTRYFKG
GLLTNAPLLFGPTVRLPDLIIFLHTLNNVFEPHVAVRDAAKMNIPTVGVVDTNCNPCLITYPVP
GNDDSPPSVQLFCRLFRTVITRAKEKRRQVEALHRLQSPKRAEGHGAADSPPRVDVSHSL

hide sequence

Ensembl Acc Id:

ENSSTOP00000002026 ⟸ ENSSTOT00000002268

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000002273	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000002268.3	UniProtKB/TrEMBL
InterPro	Ribosomal_S2	UniProtKB/TrEMBL
	Ribosomal_S2_bac/mit/plastid	UniProtKB/TrEMBL
	Ribosomal_S2_CS	UniProtKB/TrEMBL
	Ribosomal_S2_flav_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Mrps2	ENTREZGENE
PANTHER	28S RIBOSOMAL PROTEIN S2, MITOCHONDRIAL	UniProtKB/TrEMBL
	PTHR12534	UniProtKB/TrEMBL
Pfam	Ribosomal_S2	UniProtKB/TrEMBL
PRINTS	RIBOSOMALS2	UniProtKB/TrEMBL
PROSITE	RIBOSOMAL_S2_1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52313	UniProtKB/TrEMBL
UniProt	I3M034	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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